RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 DARSP14868 501 aaKnown RBP13.79□□□□□ -0.2
USP40-205ENST00000430158 DNM2P50570 870 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 POU5F1BQ06416 359 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 C9orf50Q5SZB4 431 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 CCDC73Q6ZRK6 1079 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 ZNF365Q70YC5 407 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 ZNF410Q86VK4 478 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 TCP11Q8WWU5 503 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 PSPC1Q8WXF1 523 aaKnown RBP13.79□□□□□ -0.2
USP40-205ENST00000430158 LARP4BQ92615 738 aaKnown RBP13.79□□□□□ -0.2
USP40-205ENST00000430158 CDK5RAP3Q96JB5 506 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 ZNF668Q96K58 619 aaPredicted RBP13.79□□□□□ -0.2
USP40-205ENST00000430158 PPP1R16BQ96T49 567 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 OSMRQ99650 979 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 LBHD1Q9BQE6 289 aaPredicted RBP13.79□□□□□ -0.2
USP40-205ENST00000430158 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.79□□□□□ -0.2
USP40-205ENST00000430158 POLR3FQ9H1D9 316 aaPredicted RBP13.79□□□□□ -0.2
USP40-205ENST00000430158 ERVK-5Q9HDB9 667 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 KBTBD4Q9NVX7 518 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 KCND2Q9NZV8 630 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 CCDC39Q9UFE4 941 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 KCNH3Q9ULD8 1083 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 AKT3Q9Y243 479 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 NOC2LQ9Y3T9 749 aaKnown RBP13.79□□□□□ -0.2
USP40-205ENST00000430158 COL4A3BPQ9Y5P4 624 aa13.79□□□□□ -0.2
USP40-205ENST00000430158 MYO9BQ13459 2157 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 A0A087WZ62 844 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 NPHP3-ACAD11A0A0J9YXS1 232 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 A0A1B0GVL5 298 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 MYMKA6NI61 221 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 PFKMP08237 780 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 GHRP10912 638 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 PFKFB1P16118 471 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 TXLNAP40222 546 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 PTENP60484 403 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 CDC42EP1Q00587 391 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 CAPSQ13938 189 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 MXD4Q14582 209 aaPredicted RBP13.78□□□□□ -0.2
USP40-205ENST00000430158 PRPF38BQ5VTL8 546 aaKnown RBP13.78□□□□□ -0.2
USP40-205ENST00000430158 TSHZ1Q6ZSZ6 1077 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 DEFB128Q7Z7B8 93 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 RTN4RL1Q86UN2 441 aaPredicted RBP13.78□□□□□ -0.2
USP40-205ENST00000430158 FAM228AQ86W67 206 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 RHPN2Q8IUC4 686 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 RPUSD2Q8IZ73 545 aaKnown RBP13.78□□□□□ -0.2
USP40-205ENST00000430158 PDILTQ8N807 584 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 DBF4BQ8NFT6 615 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 DNAJC19Q96DA6 116 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 FDXACB1Q9BRP7 624 aaPredicted RBP13.78□□□□□ -0.2
USP40-205ENST00000430158 TMX1Q9H3N1 280 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 MINDY3Q9H8M7 445 aa13.78□□□□□ -0.2
USP40-205ENST00000430158 POLR2DO15514 142 aaKnown RBP13.77□□□□□ -0.21
USP40-205ENST00000430158 ACTN4O43707 911 aaKnown RBP13.77□□□□□ -0.21
USP40-205ENST00000430158 HIP1RO75146 1068 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 EIF4BP23588 611 aaKnown RBP13.77□□□□□ -0.21
USP40-205ENST00000430158 STAT6P42226 847 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 NDUFA8P51970 172 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 ZNF131P52739 623 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 GIT2Q14161 759 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 SHHQ15465 462 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 FAM102BQ5T8I3 360 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 CDCA2Q69YH5 1023 aaPredicted RBP13.77□□□□□ -0.21
USP40-205ENST00000430158 CNNM4Q6P4Q7 775 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 MAEAQ7L5Y9 396 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 GPBP1Q86WP2 473 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 USP38Q8NB14 1042 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 ENGASEQ8NFI3 743 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 HERVK_113Q902F9 699 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 KCNN1Q92952 543 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 CCDC43Q96MW1 224 aaKnown RBP13.77□□□□□ -0.21
USP40-205ENST00000430158 FIZ1Q96SL8 496 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 TIPINQ9BVW5 301 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 TMEM121BQ9BXQ6 578 aaPredicted RBP13.77□□□□□ -0.21
USP40-205ENST00000430158 NFKBIZQ9BYH8 718 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 PADI3Q9ULW8 664 aa13.77□□□□□ -0.21
USP40-205ENST00000430158 ADGRA3Q8IWK6 1321 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 GADD45BO75293 160 aaPredicted RBP13.76□□□□□ -0.21
USP40-205ENST00000430158 CSDE1O75534 798 aaKnown RBP13.76□□□□□ -0.21
USP40-205ENST00000430158 SSBP05455 408 aaKnown RBP eCLIP13.76□□□□□ -0.21
USP40-205ENST00000430158 SRGAP2CP0DJJ0 459 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 CD52P31358 61 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 SNW1Q13573 536 aaKnown RBP13.76□□□□□ -0.21
USP40-205ENST00000430158 DSC3Q14574 896 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 AMHR2Q16671 573 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 LONRF3Q496Y0 759 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 CNKSR3Q6P9H4 555 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 CRIPAKQ8N1N5 446 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 FSIP1Q8NA03 581 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 IQUBQ8NA54 791 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 RNF149Q8NC42 400 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 LINC01599Q8WXQ3 324 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 KIFAP3Q92845 792 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 DHX58Q96C10 678 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 REEP2Q9BRK0 252 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 NTPCRQ9BSD7 190 aaKnown RBP13.76□□□□□ -0.21
USP40-205ENST00000430158 UBE2OQ9C0C9 1292 aaKnown RBP13.76□□□□□ -0.21
USP40-205ENST00000430158 CUEDC2Q9H467 287 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 FAM13BQ9NYF5 915 aa13.76□□□□□ -0.21
USP40-205ENST00000430158 CXXC1Q9P0U4 656 aaPredicted RBP13.76□□□□□ -0.21
USP40-205ENST00000430158 ST3GAL5Q9UNP4 418 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms