RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 ECM2O94769 699 aaPredicted RBP11.63□□□□□ -0.55
CUX1-205ENST00000425244 GOLGA6DP0CG33 693 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 DSG3P32926 999 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 CIITAP33076 1130 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 PPATQ06203 517 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 TRAF1Q13077 416 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 GBP6Q6ZN66 633 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 IRF2BP2Q7Z5L9 587 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 KLHL7Q8IXQ5 586 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 GOLGA6AQ9NYA3 693 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 PKD2L1Q9P0L9 805 aa11.63□□□□□ -0.55
CUX1-205ENST00000425244 AJAP1Q9UKB5 411 aaPredicted RBP11.63□□□□□ -0.55
CUX1-205ENST00000425244 SPDYE16A6NNV3 312 aaPredicted RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 GAS7O60861 476 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 HEXIM1O94992 359 aaKnown RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 GLI1P08151 1106 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 RPS6P62753 249 aaKnown RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 RUFY1Q96T51 708 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 POLR3CQ9BUI4 534 aaPredicted RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 EPB41L5Q9HCM4 733 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 RNF146Q9NTX7 359 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 COL20A1Q9P218 1284 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 NFU1Q9UMS0 254 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 COL11A1P12107 1806 aaPredicted RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 SPDYE5A6NIY4 337 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 DDX39AO00148 427 aaKnown RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 EIF2AK2P19525 551 aaKnown RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 CYP2J2P51589 502 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 GUCY2FP51841 1108 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 EPHB4P54760 987 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 EPHA7Q15375 998 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 RPS6KA1Q15418 735 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 KCTD19Q17RG1 926 aaPredicted RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 DNAJC21Q5F1R6 531 aaKnown RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 MEI1Q5TIA1 1274 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 ALKBH5Q6P6C2 394 aaKnown RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 TSEN2Q8NCE0 465 aaKnown RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 FAM76AQ8TAV0 307 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 CLEC4DQ8WXI8 215 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 SLC35C1Q96A29 364 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 C12orf42Q96LP6 360 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 METTL14Q9HCE5 456 aaKnown RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 PLCB1Q9NQ66 1216 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 HOXC10Q9NYD6 342 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 PCDHGC5Q9Y5F6 944 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 STK24Q9Y6E0 443 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 IGLV3-22A0A075B6J6 115 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 GFPT2O94808 682 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 SLITRK3O94933 977 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 GJA5P36382 358 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 CARSP49589 748 aaKnown RBP11.62□□□□□ -0.55
CUX1-205ENST00000425244 OTOP1Q7RTM1 612 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 IFT20Q8IY31 132 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 FAM186BQ8IYM0 893 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 NAGPAQ9UK23 515 aa11.62□□□□□ -0.55
CUX1-205ENST00000425244 WDR90Q96KV7 1748 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 TMCO5BA8MYB1 307 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 CEP104O60308 925 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 WDR78Q5VTH9 848 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 DPY19L2P1Q6NXN4 242 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 EMBQ6PCB8 327 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 RNF207Q6ZRF8 634 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 MAEAQ7L5Y9 396 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 U2AF1L4Q8WU68 220 aaKnown RBP11.61□□□□□ -0.55
CUX1-205ENST00000425244 HSD17B14Q9BPX1 270 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 PARVGQ9HBI0 331 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 ZNF214Q9UL59 606 aaPredicted RBP11.61□□□□□ -0.55
CUX1-205ENST00000425244 PIK3CDO00329 1044 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 SLC16A3O15427 465 aaKnown RBP11.61□□□□□ -0.55
CUX1-205ENST00000425244 TGFB1I1O43294 461 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 HSF2BPO75031 334 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 CYP3A4P08684 503 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 MYCLP12524 364 aaPredicted RBP11.61□□□□□ -0.55
CUX1-205ENST00000425244 GAP43P17677 238 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 BAATQ14032 418 aaPredicted RBP11.61□□□□□ -0.55
CUX1-205ENST00000425244 BMT2Q1RMZ1 405 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 VPS36Q86VN1 386 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 TAAR1Q96RJ0 339 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 RABEP2Q9H5N1 569 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 GBA2Q9HCG7 927 aaPredicted RBP11.61□□□□□ -0.55
CUX1-205ENST00000425244 RNF14Q9UBS8 474 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 RSPH14Q9UHP6 348 aa11.61□□□□□ -0.55
CUX1-205ENST00000425244 BZW2Q9Y6E2 419 aaKnown RBP11.61□□□□□ -0.55
CUX1-205ENST00000425244 DNAH12Q6ZR08 3092 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 A0A0G2JLL6 359 aaPredicted RBP11.6□□□□□ -0.55
CUX1-205ENST00000425244 IVLP07476 585 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 FAM153BP0C7A2 387 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 TRIM49P0CI25 452 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 TRIM49CP0CI26 452 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 TRADDQ15628 312 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 FAM153CQ494X1 144 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 SH3D19Q5HYK7 790 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 ODR4Q5SWX8 454 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 LRRC31Q6UY01 552 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 PRRT2Q7Z6L0 340 aaPredicted RBP11.6□□□□□ -0.55
CUX1-205ENST00000425244 FAM178BQ8IXR5 827 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 C2orf69Q8N8R5 385 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 RDH13Q8NBN7 331 aa11.6□□□□□ -0.55
CUX1-205ENST00000425244 PROCA1Q8NCQ7 364 aaPredicted RBP11.6□□□□□ -0.55
CUX1-205ENST00000425244 IL31RAQ8NI17 732 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms