RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 RCOR1Q9UKL0 485 aa10.58□□□□□ -0.72
USP54-205ENST00000424265 UBR3Q6ZT12 1888 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 LAMB2P55268 1798 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 ZNF541Q9H0D2 1346 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 ARHGEF35A5YM69 484 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 ASB14A6NK59 587 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 ZNF157P51786 506 aaPredicted RBP10.57□□□□□ -0.72
USP54-205ENST00000424265 PRR16Q569H4 304 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 FKBP15Q5T1M5 1219 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 PLIN4Q96Q06 1357 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 SBF2Q86WG5 1849 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 CNTNAP5Q8WYK1 1306 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 BIN1O00499 593 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 PPIL2Q13356 520 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 NCAPH2Q6IBW4 605 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 SRBD1Q8N5C6 995 aaKnown RBP10.57□□□□□ -0.72
USP54-205ENST00000424265 NAF1Q96HR8 494 aaKnown RBP10.57□□□□□ -0.72
USP54-205ENST00000424265 CTAGE1Q96RT6 745 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 USP28Q96RU2 1077 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 MIS12Q9H081 205 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 RRAGCQ9HB90 399 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 PREBQ9HCU5 417 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 DLGAP2Q9P1A6 1054 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 COL2A1P02458 1487 aaPredicted RBP10.57□□□□□ -0.72
USP54-205ENST00000424265 SYNRGQ9UMZ2 1314 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 CCDC160A6NGH7 325 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 WTIPA6NIX2 430 aaPredicted RBP10.57□□□□□ -0.72
USP54-205ENST00000424265 NAA15Q9BXJ9 866 aaKnown RBP10.57□□□□□ -0.72
USP54-205ENST00000424265 MLXIPQ9HAP2 919 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 WDR35Q9P2L0 1181 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 TESPA1A2RU30 521 aaPredicted RBP10.57□□□□□ -0.72
USP54-205ENST00000424265 STAM2O75886 525 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 LSP1P33241 339 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 ANKRD20A8PQ5CZ79 823 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 WDR60Q8WVS4 1066 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 STK17AQ9UEE5 414 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 PRR12Q9ULL5 1215 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 EXOC7Q9UPT5 735 aa10.57□□□□□ -0.72
USP54-205ENST00000424265 STIP1P31948 543 aaKnown RBP10.56□□□□□ -0.72
USP54-205ENST00000424265 HS2ST1Q7LGA3 356 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 ZNF579Q8NAF0 562 aaKnown RBP10.56□□□□□ -0.72
USP54-205ENST00000424265 KIFAP3Q92845 792 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 HIC2Q96JB3 615 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 CENPKQ9BS16 269 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 DESI2Q9BSY9 194 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 BRD8Q9H0E9 1235 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 NRDE2Q9H7Z3 1164 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 TBC1D22BQ9NU19 505 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 RASAL2Q9UJF2 1139 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 COL24A1Q17RW2 1714 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 TRIM43BA6NCK2 446 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 PLA2G6O60733 806 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 LINGO3P0C6S8 592 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 CCDC166P0CW27 439 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 FCER1AP12319 257 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 NR1D1P20393 614 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 DNM2P50570 870 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 STXBP2Q15833 593 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 GRIK5Q16478 980 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 ZNF554Q86TJ5 538 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.56□□□□□ -0.72
USP54-205ENST00000424265 ANKRD27Q96NW4 1050 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 TRAPPC9Q96Q05 1148 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 CTTNBP2NLQ9P2B4 639 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 SEL1LQ9UBV2 794 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 BARX2Q9UMQ3 279 aaPredicted RBP10.56□□□□□ -0.72
USP54-205ENST00000424265 CARD8Q9Y2G2 431 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 TMED5Q9Y3A6 229 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 GMEB1Q9Y692 573 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 CDAN1Q8IWY9 1227 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 PPFIBP2Q8ND30 876 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 MPP4Q96JB8 637 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 CORO1BQ9BR76 489 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 TAF1DQ9H5J8 278 aaPredicted RBP10.56□□□□□ -0.72
USP54-205ENST00000424265 NRBP2Q9NSY0 501 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 MAD2L2Q9UI95 211 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 PCDHA6Q9UN73 950 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 L3MBTL1Q9Y468 752 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 PCDHA8Q9Y5H6 950 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 CCL15-CCL14A0A0B4J2E2 113 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 SH3BP5O60239 455 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 TACC1O75410 805 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 PPP1R37O75864 691 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 JAK3P52333 1124 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 ELF3P78545 371 aaPredicted RBP10.56□□□□□ -0.72
USP54-205ENST00000424265 PTGDRQ13258 359 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 CCL15Q16663 113 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 TRIM65Q6PJ69 517 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 TTC30AQ86WT1 665 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 CCDC197Q8NCU1 140 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 GMLQ99445 158 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 MOV10L1Q9BXT6 1211 aaKnown RBP10.56□□□□□ -0.72
USP54-205ENST00000424265 NDEL1Q9GZM8 345 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 PFDN4Q9NQP4 134 aa10.56□□□□□ -0.72
USP54-205ENST00000424265 OPLAHO14841 1288 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 TBX3O15119 743 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 ICAM1P05362 532 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 MYCLP1P12525 358 aaPredicted RBP10.55□□□□□ -0.72
USP54-205ENST00000424265 RPL13P26373 211 aaKnown RBP10.55□□□□□ -0.72
USP54-205ENST00000424265 APBA1Q02410 837 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms