RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TOE1Q96GM8 510 aaKnown RBP3.23□□□□□ -1.89
VPS13A-208ENST00000423463 SMURF1Q9HCE7 757 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 COL3A1P02461 1466 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-208ENST00000423463 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-208ENST00000423463 MAN2B1O00754 1011 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 ANP32CO43423 234 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 HTATSF1O43719 755 aaKnown RBP3.23□□□□□ -1.89
VPS13A-208ENST00000423463 SDSP20132 328 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 PRKAR2BP31323 418 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 HTRA3P83110 453 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 ZC3H12BQ5HYM0 836 aaKnown RBP3.23□□□□□ -1.89
VPS13A-208ENST00000423463 SPOCD1Q6ZMY3 1216 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 FAM177A1Q8N128 213 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-208ENST00000423463 ZSCAN18Q8TBC5 510 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-208ENST00000423463 CPA5Q8WXQ8 436 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 PIGBQ92521 554 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 C11orf84Q9BUA3 381 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-208ENST00000423463 TMOD3Q9NYL9 352 aa3.23□□□□□ -1.89
VPS13A-208ENST00000423463 TNPO3Q9Y5L0 923 aaKnown RBP3.23□□□□□ -1.89
VPS13A-208ENST00000423463 RNMTO43148 476 aaKnown RBP3.22□□□□□ -1.89
VPS13A-208ENST00000423463 EFCAB14O75071 495 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 DNAJC8O75937 253 aaPredicted RBP3.22□□□□□ -1.89
VPS13A-208ENST00000423463 CKMP06732 381 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 THBS2P35442 1172 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 NKX3-2P78367 333 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 DLX2Q07687 328 aaPredicted RBP3.22□□□□□ -1.89
VPS13A-208ENST00000423463 PABPC4Q13310 644 aaKnown RBP eCLIP3.22□□□□□ -1.89
VPS13A-208ENST00000423463 ADAM9Q13443 819 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 FAM47CQ5HY64 1035 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 HABP4Q5JVS0 413 aaKnown RBP3.22□□□□□ -1.89
VPS13A-208ENST00000423463 SDE2Q6IQ49 451 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 PHACTR3Q96KR7 559 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 MRPL4Q9BYD3 311 aaKnown RBP3.22□□□□□ -1.89
VPS13A-208ENST00000423463 RIC8BQ9NVN3 520 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 STK32BQ9NY57 414 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 SRPK3Q9UPE1 567 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 RGPD2P0DJD1 1756 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 WNK3Q9BYP7 1800 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 RGPD1P0DJD0 1748 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 FAM90A27PA6NNH2 459 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 ACOT7O00154 380 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 WNT9AO14904 365 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 PLD2O14939 933 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 OPA1O60313 960 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 CDC45O75419 566 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 PTPN1P18031 435 aaKnown RBP3.22□□□□□ -1.89
VPS13A-208ENST00000423463 FZD5Q13467 585 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 SEC23AQ15436 765 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 CRY1Q16526 586 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 PAN2Q504Q3 1202 aaKnown RBP3.22□□□□□ -1.89
VPS13A-208ENST00000423463 LIPIQ6XZB0 460 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 ZDHHC14Q8IZN3 488 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 PHOSPHO1Q8TCT1 267 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 SPATA25Q9BR10 227 aa3.22□□□□□ -1.89
VPS13A-208ENST00000423463 ZNF561-AS1K7EIQ3 104 aa3.21□□□□□ -1.89
VPS13A-208ENST00000423463 ENPP3O14638 875 aa3.21□□□□□ -1.89
VPS13A-208ENST00000423463 GLRX3O76003 335 aaKnown RBP3.21□□□□□ -1.89
VPS13A-208ENST00000423463 JMJD7P0C870 316 aa3.21□□□□□ -1.89
VPS13A-208ENST00000423463 WDR43Q15061 677 aaKnown RBP eCLIP3.21□□□□□ -1.89
VPS13A-208ENST00000423463 SLC15A2Q16348 729 aa3.21□□□□□ -1.89
VPS13A-208ENST00000423463 CD276Q5ZPR3 534 aa3.21□□□□□ -1.89
VPS13A-208ENST00000423463 LINC01356Q8N9X3 169 aa3.21□□□□□ -1.89
VPS13A-208ENST00000423463 TP53I13Q8NBR0 393 aaPredicted RBP3.21□□□□□ -1.89
VPS13A-208ENST00000423463 IL17REQ8NFR9 667 aa3.21□□□□□ -1.89
VPS13A-208ENST00000423463 FEZF2Q8TBJ5 459 aa3.21□□□□□ -1.89
VPS13A-208ENST00000423463 RTF1Q92541 710 aaKnown RBP3.21□□□□□ -1.89
VPS13A-208ENST00000423463 APPBP2Q92624 585 aa3.21□□□□□ -1.89
VPS13A-208ENST00000423463 PLEKHF1Q96S99 279 aa3.21□□□□□ -1.89
VPS13A-208ENST00000423463 CELF4Q9BZC1 486 aaKnown RBP3.21□□□□□ -1.89
VPS13A-208ENST00000423463 SPATA6Q9NWH7 488 aaPredicted RBP3.21□□□□□ -1.89
VPS13A-208ENST00000423463 CCNL1Q9UK58 526 aaPredicted RBP3.21□□□□□ -1.89
VPS13A-208ENST00000423463 CROTQ9UKG9 612 aa3.21□□□□□ -1.89
VPS13A-208ENST00000423463 PALLDQ8WX93 1383 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 MAP3K5Q99683 1374 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 CCDC163A0A0D9SF12 145 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 SCDO00767 359 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 KRT37O76014 449 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 TEFQ10587 303 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 R3HDM1Q15032 1099 aaKnown RBP3.21□□□□□ -1.9
VPS13A-208ENST00000423463 GPR19Q15760 415 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 SKOR2Q2VWA4 1001 aaPredicted RBP3.21□□□□□ -1.9
VPS13A-208ENST00000423463 TMEM177Q53S58 311 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 PIK3R6Q5UE93 754 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 EP400NLQ6ZTU2 488 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 C16orf59Q7L2K0 433 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 SAPCD2Q86UD0 394 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 HOMER1Q86YM7 354 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 SLC39A2Q9NP94 309 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 ASAP1Q9ULH1 1129 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 PKD1L3Q7Z443 1732 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 KDM6AO15550 1401 aaPredicted RBP3.21□□□□□ -1.9
VPS13A-208ENST00000423463 MAPK8IP3Q9UPT6 1336 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 NHSQ6T4R5 1651 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 PRAMEF25A6NGN4 478 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 M0R2C6 588 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 KPNA6O60684 536 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 FAHP16930 419 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 HSD3B2P26439 372 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 MC4RP32245 332 aa3.21□□□□□ -1.9
VPS13A-208ENST00000423463 GLRBP48167 497 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms