RNA–Protein interactions for RNA: ENST00000418660.1

LINC00404-201, long intergenic non-protein coding RNA 404, humanhuman

TSL 2 BASIC

Gene LINC00404, Length 428 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00404-201ENST00000418660 NSUN3Q9H649 340 aaKnown RBP18.38■□□□□ 0.53
LINC00404-201ENST00000418660 IFT122Q9HBG6 1241 aa18.38■□□□□ 0.53
LINC00404-201ENST00000418660 PLAGL2Q9UPG8 496 aa18.38■□□□□ 0.53
LINC00404-201ENST00000418660 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.37■□□□□ 0.53
LINC00404-201ENST00000418660 CD2BP2O95400 341 aaKnown RBP18.37■□□□□ 0.53
LINC00404-201ENST00000418660 EOMESO95936 686 aa18.37■□□□□ 0.53
LINC00404-201ENST00000418660 OR52Z1P0C646 297 aa18.37■□□□□ 0.53
LINC00404-201ENST00000418660 BMP1P13497 986 aa18.37■□□□□ 0.53
LINC00404-201ENST00000418660 TECP42680 631 aa18.37■□□□□ 0.53
LINC00404-201ENST00000418660 LAMTOR4Q0VGL1 99 aa18.37■□□□□ 0.53
LINC00404-201ENST00000418660 SPOUT1Q5T280 376 aaKnown RBP18.37■□□□□ 0.53
LINC00404-201ENST00000418660 CATSPER4Q7RTX7 472 aa18.37■□□□□ 0.53
LINC00404-201ENST00000418660 KLHL23Q8NBE8 558 aa18.37■□□□□ 0.53
LINC00404-201ENST00000418660 MTRQ99707 1265 aa18.37■□□□□ 0.53
LINC00404-201ENST00000418660 TRAIPQ9BWF2 469 aa18.37■□□□□ 0.53
LINC00404-201ENST00000418660 TMEM117Q9H0C3 514 aa18.37■□□□□ 0.53
LINC00404-201ENST00000418660 TUFT1Q9NNX1 390 aa18.37■□□□□ 0.53
LINC00404-201ENST00000418660 ALG13Q9NP73 1137 aaKnown RBP18.37■□□□□ 0.53
LINC00404-201ENST00000418660 AAASQ9NRG9 546 aa18.37■□□□□ 0.53
LINC00404-201ENST00000418660 BMP2KQ9NSY1 1161 aaPredicted RBP18.37■□□□□ 0.53
LINC00404-201ENST00000418660 DGAT1O75907 488 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 ITGB1P05556 798 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 SRGAP2CP0DJJ0 459 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 SPATA31C1P0DKV0 1188 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 KCNQ1P51787 676 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 TCEAL5Q5H9L2 206 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 SRGAP1Q7Z6B7 1085 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 FERMT3Q86UX7 667 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 CATSPER3Q86XQ3 398 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 C4orf32Q8N8J7 132 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 SPPL3Q8TCT6 385 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 PIGOQ8TEQ8 1089 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 CASD1Q96PB1 797 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 UBE2ZQ9H832 354 aaPredicted RBP18.36■□□□□ 0.53
LINC00404-201ENST00000418660 XPNPEP1Q9NQW7 623 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 RNF19AQ9NV58 838 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 TYW1Q9NV66 732 aaKnown RBP18.36■□□□□ 0.53
LINC00404-201ENST00000418660 PCDHB12Q9Y5F1 795 aa18.36■□□□□ 0.53
LINC00404-201ENST00000418660 A0A0C4DFX4 3053 aa18.35■□□□□ 0.53
LINC00404-201ENST00000418660 RARRES1P49788 294 aa18.35■□□□□ 0.53
LINC00404-201ENST00000418660 MXD4Q14582 209 aaPredicted RBP18.35■□□□□ 0.53
LINC00404-201ENST00000418660 TWF2Q6IBS0 349 aaKnown RBP18.35■□□□□ 0.53
LINC00404-201ENST00000418660 ZNF598Q86UK7 904 aaKnown RBP18.35■□□□□ 0.53
LINC00404-201ENST00000418660 ABI1Q8IZP0 508 aa18.35■□□□□ 0.53
LINC00404-201ENST00000418660 RNF169Q8NCN4 708 aa18.35■□□□□ 0.53
LINC00404-201ENST00000418660 ERMNQ8TAM6 284 aa18.35■□□□□ 0.53
LINC00404-201ENST00000418660 ADAMTS19Q8TE59 1207 aa18.35■□□□□ 0.53
LINC00404-201ENST00000418660 CCDC43Q96MW1 224 aaKnown RBP18.35■□□□□ 0.53
LINC00404-201ENST00000418660 POLR3CQ9BUI4 534 aaPredicted RBP18.35■□□□□ 0.53
LINC00404-201ENST00000418660 CWH43Q9H720 699 aa18.35■□□□□ 0.53
LINC00404-201ENST00000418660 PIN4Q9Y237 131 aaKnown RBP18.35■□□□□ 0.53
LINC00404-201ENST00000418660 A0A087WWV3 80 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 MED24O75448 989 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 SKIP12755 728 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 ATF7P17544 494 aaPredicted RBP18.34■□□□□ 0.53
LINC00404-201ENST00000418660 RPA1P27694 616 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 PHKA2P46019 1235 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 TOB1P50616 345 aaPredicted RBP18.34■□□□□ 0.53
LINC00404-201ENST00000418660 CAMK1Q14012 370 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 NBR1Q14596 966 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 CSPP1Q1MSJ5 1256 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 COLGALT1Q8NBJ5 622 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 RNF149Q8NC42 400 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 NACC1Q96RE7 527 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 AGPAT5Q9NUQ2 364 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 DBR1Q9UK59 544 aaKnown RBP18.34■□□□□ 0.53
LINC00404-201ENST00000418660 FNDC1Q4ZHG4 1894 aaPredicted RBP18.34■□□□□ 0.53
LINC00404-201ENST00000418660 ARID2Q68CP9 1835 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 KIAA1671Q9BY89 1806 aa18.34■□□□□ 0.53
LINC00404-201ENST00000418660 NCK2O43639 380 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 ZNF623O75123 536 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 LAG3P18627 525 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 DNAJB1P25685 340 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 GJB2P29033 226 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 ARL2P36404 184 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 FXR2P51116 673 aaKnown RBP eCLIP18.33■□□□□ 0.52
LINC00404-201ENST00000418660 RAB27AP51159 221 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 UBE3AQ05086 875 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 POU5F1BQ06416 359 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 TFDP1Q14186 410 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 COL19A1Q14993 1142 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 CLLU1OSQ5K130 101 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 LRRC55Q6ZSA7 311 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 LRRC43Q8N309 656 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 POF1BQ8WVV4 589 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 RSPH1Q8WYR4 309 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 PABPC5Q96DU9 382 aaKnown RBP18.33■□□□□ 0.52
LINC00404-201ENST00000418660 UHRF1Q96T88 793 aaPredicted RBP18.33■□□□□ 0.52
LINC00404-201ENST00000418660 MINDY3Q9H8M7 445 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 FAM105AQ9NUU6 356 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 HCSTQ9UBK5 93 aa18.33■□□□□ 0.52
LINC00404-201ENST00000418660 FGF18O76093 207 aa18.32■□□□□ 0.52
LINC00404-201ENST00000418660 MUTP22033 750 aa18.32■□□□□ 0.52
LINC00404-201ENST00000418660 KCNA5P22460 613 aa18.32■□□□□ 0.52
LINC00404-201ENST00000418660 PTENP60484 403 aa18.32■□□□□ 0.52
LINC00404-201ENST00000418660 PTGDRQ13258 359 aa18.32■□□□□ 0.52
LINC00404-201ENST00000418660 PDIA5Q14554 519 aa18.32■□□□□ 0.52
LINC00404-201ENST00000418660 PCBP1Q15365 356 aaKnown RBP eCLIP18.32■□□□□ 0.52
LINC00404-201ENST00000418660 LEXMQ3ZCV2 418 aa18.32■□□□□ 0.52
LINC00404-201ENST00000418660 MCTP1Q6DN14 999 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms