RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 MAP7D2Q96T17 732 aa14.56□□□□□ -0.08
LINC00339-202ENST00000416769 UNC45AQ9H3U1 944 aa14.56□□□□□ -0.08
LINC00339-202ENST00000416769 DISC1Q9NRI5 854 aa14.56□□□□□ -0.08
LINC00339-202ENST00000416769 TBC1D22BQ9NU19 505 aa14.56□□□□□ -0.08
LINC00339-202ENST00000416769 VPS54Q9P1Q0 977 aa14.56□□□□□ -0.08
LINC00339-202ENST00000416769 PUF60Q9UHX1 559 aaKnown RBP14.56□□□□□ -0.08
LINC00339-202ENST00000416769 VPS13AQ96RL7 3174 aa14.56□□□□□ -0.08
LINC00339-202ENST00000416769 C2orf16Q68DN1 1984 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 ESYT2A0FGR8 921 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 DTNBO60941 627 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 STBD1O95210 358 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 CIITAP33076 1130 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 SETQ01105 290 aaPredicted RBP14.55□□□□□ -0.08
LINC00339-202ENST00000416769 SMC1AQ14683 1233 aaKnown RBP14.55□□□□□ -0.08
LINC00339-202ENST00000416769 PDE12Q6L8Q7 609 aaKnown RBP14.55□□□□□ -0.08
LINC00339-202ENST00000416769 Q6ZUG5 572 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 ASCL5Q7RTU5 278 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 KSR1Q8IVT5 923 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 SMAP1Q8IYB5 467 aaPredicted RBP14.55□□□□□ -0.08
LINC00339-202ENST00000416769 BRF1Q92994 677 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 JAKMIP1Q96N16 626 aaKnown RBP14.55□□□□□ -0.08
LINC00339-202ENST00000416769 SCLT1Q96NL6 688 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 CEP89Q96ST8 783 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 ADAM7Q9H2U9 754 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 NCOA5Q9HCD5 579 aaKnown RBP14.55□□□□□ -0.08
LINC00339-202ENST00000416769 ZSWIM6Q9HCJ5 1215 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 NGRNQ9NPE2 291 aaKnown RBP14.55□□□□□ -0.08
LINC00339-202ENST00000416769 DENND4AQ7Z401 1863 aa14.55□□□□□ -0.08
LINC00339-202ENST00000416769 A0A0U1RQF3 1178 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.54□□□□□ -0.08
LINC00339-202ENST00000416769 WDR64B1ANS9 1081 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 MAGEB2O15479 319 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 ZC3H11AO75152 810 aaKnown RBP eCLIP14.54□□□□□ -0.08
LINC00339-202ENST00000416769 TDP2O95551 362 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 ZSCAN20P17040 1043 aaPredicted RBP14.54□□□□□ -0.08
LINC00339-202ENST00000416769 AFF1P51825 1210 aaKnown RBP14.54□□□□□ -0.08
LINC00339-202ENST00000416769 TARBP2Q15633 366 aaKnown RBP14.54□□□□□ -0.08
LINC00339-202ENST00000416769 NTRK3Q16288 839 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 MTERF2Q49AM1 385 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 ODR4Q5SWX8 454 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 VPS52Q8N1B4 723 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 NLRP7Q8WX94 980 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 CASP10Q92851 521 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 KIF2CQ99661 725 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 ZBP1Q9H171 429 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 C6orf50Q9HD87 102 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 DNAJB4Q9UDY4 337 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 LIMD1Q9UGP4 676 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 TCEAL9Q9UHQ7 104 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 INPP5FQ9Y2H2 1132 aa14.54□□□□□ -0.08
LINC00339-202ENST00000416769 GVINP1Q7Z2Y8 2422 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 A0A087WZ62 844 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 PRPF3O43395 683 aaKnown RBP14.53□□□□□ -0.08
LINC00339-202ENST00000416769 ST18O60284 1047 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 CXCL14O95715 111 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 SRGAP2BP0DMP2 458 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 MYBP10242 640 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 HOXB8P17481 243 aaPredicted RBP14.53□□□□□ -0.08
LINC00339-202ENST00000416769 PPM1AP35813 382 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 KRT17Q04695 432 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 BLOC1S2Q6QNY1 142 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 TMC5Q6UXY8 1006 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 RUFY3Q7L099 469 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 SLC5A5Q92911 643 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 FAM167AQ96KS9 214 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 FDXACB1Q9BRP7 624 aaPredicted RBP14.53□□□□□ -0.08
LINC00339-202ENST00000416769 GLT8D2Q9H1C3 349 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 NRDE2Q9H7Z3 1164 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 SEPT9Q9UHD8 586 aaPredicted RBP14.53□□□□□ -0.08
LINC00339-202ENST00000416769 CEP131Q9UPN4 1083 aa14.53□□□□□ -0.08
LINC00339-202ENST00000416769 DMDP11532 3685 aa14.52□□□□□ -0.08
LINC00339-202ENST00000416769 HOXA2O43364 376 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 SSBP05455 408 aaKnown RBP eCLIP14.52□□□□□ -0.09
LINC00339-202ENST00000416769 RPS6KB1P23443 525 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 PHKA2P46019 1235 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 SLC11A1P49279 550 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 CCT2P78371 535 aaKnown RBP14.52□□□□□ -0.09
LINC00339-202ENST00000416769 TBC1D8BQ0IIM8 1120 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 MTMR3Q13615 1198 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 PLA2G4FQ68DD2 849 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 ZNF280BQ86YH2 543 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 ZNF579Q8NAF0 562 aaKnown RBP14.52□□□□□ -0.09
LINC00339-202ENST00000416769 SLC22A17Q8WUG5 538 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 LARP6Q9BRS8 491 aaKnown RBP14.52□□□□□ -0.09
LINC00339-202ENST00000416769 SLC26A6Q9BXS9 759 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 GBP3Q9H0R5 595 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 TBC1D13Q9NVG8 400 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 SORCS3Q9UPU3 1222 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 CYP46A1Q9Y6A2 500 aa14.52□□□□□ -0.09
LINC00339-202ENST00000416769 NID2Q14112 1375 aa14.51□□□□□ -0.09
LINC00339-202ENST00000416769 GALR2O43603 387 aaPredicted RBP14.51□□□□□ -0.09
LINC00339-202ENST00000416769 GAS7O60861 476 aa14.51□□□□□ -0.09
LINC00339-202ENST00000416769 PSMD10O75832 226 aa14.51□□□□□ -0.09
LINC00339-202ENST00000416769 TMOD1P28289 359 aa14.51□□□□□ -0.09
LINC00339-202ENST00000416769 FGD1P98174 961 aa14.51□□□□□ -0.09
LINC00339-202ENST00000416769 RABEP1Q15276 862 aa14.51□□□□□ -0.09
LINC00339-202ENST00000416769 TPRNQ4KMQ1 711 aa14.51□□□□□ -0.09
LINC00339-202ENST00000416769 LRCH2Q5VUJ6 765 aa14.51□□□□□ -0.09
LINC00339-202ENST00000416769 CWF19L1Q69YN2 538 aaKnown RBP14.51□□□□□ -0.09
LINC00339-202ENST00000416769 TEX2Q8IWB9 1127 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms