RNA–Protein interactions for RNA: ENST00000416538.5

UBXN4-203, Transcript of UBX domain protein 4, humanhuman

TSL 5

Gene UBXN4, Length 1,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-203ENST00000416538 RHPN2Q8IUC4 686 aa16.93■□□□□ 0.3
UBXN4-203ENST00000416538 CCDC83Q8IWF9 413 aa16.93■□□□□ 0.3
UBXN4-203ENST00000416538 FAM178BQ8IXR5 827 aa16.93■□□□□ 0.3
UBXN4-203ENST00000416538 EPHX3Q9H6B9 360 aa16.93■□□□□ 0.3
UBXN4-203ENST00000416538 DHX33Q9H6R0 707 aaKnown RBP16.93■□□□□ 0.3
UBXN4-203ENST00000416538 IFT122Q9HBG6 1241 aa16.93■□□□□ 0.3
UBXN4-203ENST00000416538 SUCLA2Q9P2R7 463 aaPredicted RBP16.93■□□□□ 0.3
UBXN4-203ENST00000416538 TDRD15B5MCY1 1934 aaKnown RBP16.93■□□□□ 0.3
UBXN4-203ENST00000416538 MEIS3P2A8K0S8 358 aa16.92■□□□□ 0.3
UBXN4-203ENST00000416538 P4HBP07237 508 aaKnown RBP16.92■□□□□ 0.3
UBXN4-203ENST00000416538 RBM10P98175 930 aaKnown RBP16.92■□□□□ 0.3
UBXN4-203ENST00000416538 NAALADL2Q58DX5 795 aa16.92■□□□□ 0.3
UBXN4-203ENST00000416538 C4orf19Q8IY42 314 aa16.92■□□□□ 0.3
UBXN4-203ENST00000416538 NLRP4Q96MN2 994 aa16.92■□□□□ 0.3
UBXN4-203ENST00000416538 TMEM117Q9H0C3 514 aa16.92■□□□□ 0.3
UBXN4-203ENST00000416538 TMEM60Q9H2L4 133 aa16.92■□□□□ 0.3
UBXN4-203ENST00000416538 MINDY3Q9H8M7 445 aa16.92■□□□□ 0.3
UBXN4-203ENST00000416538 XPNPEP1Q9NQW7 623 aa16.92■□□□□ 0.3
UBXN4-203ENST00000416538 RAPGEFL1Q9UHV5 662 aa16.92■□□□□ 0.3
UBXN4-203ENST00000416538 FGF18O76093 207 aa16.91■□□□□ 0.3
UBXN4-203ENST00000416538 CENPBP07199 599 aaPredicted RBP16.91■□□□□ 0.3
UBXN4-203ENST00000416538 YWHABP31946 246 aaKnown RBP16.91■□□□□ 0.3
UBXN4-203ENST00000416538 FAM43BQ6ZT52 329 aaPredicted RBP16.91■□□□□ 0.3
UBXN4-203ENST00000416538 ZNF410Q86VK4 478 aa16.91■□□□□ 0.3
UBXN4-203ENST00000416538 ZNF710Q8N1W2 664 aa16.91■□□□□ 0.3
UBXN4-203ENST00000416538 RNF169Q8NCN4 708 aa16.91■□□□□ 0.3
UBXN4-203ENST00000416538 VN1R2Q8NFZ6 395 aa16.91■□□□□ 0.3
UBXN4-203ENST00000416538 TMEM143Q96AN5 459 aa16.91■□□□□ 0.3
UBXN4-203ENST00000416538 NAP1L4Q99733 375 aaKnown RBP16.91■□□□□ 0.3
UBXN4-203ENST00000416538 GCOM2Q9BZD3 368 aaPredicted RBP16.91■□□□□ 0.3
UBXN4-203ENST00000416538 IGFLR1Q9H665 355 aa16.91■□□□□ 0.3
UBXN4-203ENST00000416538 C11orf16Q9NQ32 467 aa16.91■□□□□ 0.3
UBXN4-203ENST00000416538 A0A0U1RQF3 1178 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 POTEMA6NI47 508 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 ZSCAN20P17040 1043 aaPredicted RBP16.9■□□□□ 0.3
UBXN4-203ENST00000416538 ERVFC1P60507 584 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 EMC2Q15006 297 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 SPOUT1Q5T280 376 aaKnown RBP16.9■□□□□ 0.3
UBXN4-203ENST00000416538 SLFN12Q8IYM2 578 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 LRRC43Q8N309 656 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 HELQQ8TDG4 1101 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 LPPQ93052 612 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 CEP170P1Q96L14 293 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 MTMR9Q96QG7 549 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 EIF2AK1Q9BQI3 630 aaKnown RBP16.9■□□□□ 0.3
UBXN4-203ENST00000416538 BRMS1Q9HCU9 246 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 CLEC1BQ9P126 229 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 LIMCH1Q9UPQ0 1083 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 COL4A3BPQ9Y5P4 624 aa16.9■□□□□ 0.3
UBXN4-203ENST00000416538 FSCN2O14926 492 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 B4GALT3O60512 393 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 NEMFO60524 1076 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 SLITRK3O94933 977 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 LAG3P18627 525 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 PHKA2P46019 1235 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 NRIP1P48552 1158 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 POLGP54098 1239 aaPredicted RBP16.89■□□□□ 0.29
UBXN4-203ENST00000416538 ZP2Q05996 745 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 ADAM15Q13444 863 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 CALCRLQ16602 461 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 LONRF3Q496Y0 759 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 RBM23Q86U06 439 aaKnown RBP16.89■□□□□ 0.29
UBXN4-203ENST00000416538 THNSL1Q8IYQ7 743 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 MSLNLQ96KJ4 702 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 HSD17B14Q9BPX1 270 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 TLR9Q9NR96 1032 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 PIN4Q9Y237 131 aaKnown RBP16.89■□□□□ 0.29
UBXN4-203ENST00000416538 PCDHB12Q9Y5F1 795 aa16.89■□□□□ 0.29
UBXN4-203ENST00000416538 A0A087WWV3 80 aa16.88■□□□□ 0.29
UBXN4-203ENST00000416538 MBTPS2O43462 519 aa16.88■□□□□ 0.29
UBXN4-203ENST00000416538 SFPQP23246 707 aaKnown RBP eCLIP16.88■□□□□ 0.29
UBXN4-203ENST00000416538 DNM2P50570 870 aa16.88■□□□□ 0.29
UBXN4-203ENST00000416538 UBE3AQ05086 875 aa16.88■□□□□ 0.29
UBXN4-203ENST00000416538 LAMTOR4Q0VGL1 99 aa16.88■□□□□ 0.29
UBXN4-203ENST00000416538 XKR9Q5GH70 373 aa16.88■□□□□ 0.29
UBXN4-203ENST00000416538 KCNT2Q6UVM3 1135 aa16.88■□□□□ 0.29
UBXN4-203ENST00000416538 TMEM173Q86WV6 379 aaPredicted RBP16.88■□□□□ 0.29
UBXN4-203ENST00000416538 EFHBQ8N7U6 833 aa16.88■□□□□ 0.29
UBXN4-203ENST00000416538 PRPF31Q8WWY3 499 aaKnown RBP16.88■□□□□ 0.29
UBXN4-203ENST00000416538 SLC7A3Q8WY07 619 aa16.88■□□□□ 0.29
UBXN4-203ENST00000416538 TRAIPQ9BWF2 469 aa16.88■□□□□ 0.29
UBXN4-203ENST00000416538 ZSWIM4Q9H7M6 989 aa16.88■□□□□ 0.29
UBXN4-203ENST00000416538 TTC12Q9H892 705 aaPredicted RBP16.88■□□□□ 0.29
UBXN4-203ENST00000416538 AGPAT5Q9NUQ2 364 aa16.88■□□□□ 0.29
UBXN4-203ENST00000416538 BARX2Q9UMQ3 279 aaPredicted RBP16.88■□□□□ 0.29
UBXN4-203ENST00000416538 PER2O15055 1255 aa16.87■□□□□ 0.29
UBXN4-203ENST00000416538 HOXA2O43364 376 aa16.87■□□□□ 0.29
UBXN4-203ENST00000416538 MARCH6O60337 910 aa16.87■□□□□ 0.29
UBXN4-203ENST00000416538 LYPLA2O95372 231 aa16.87■□□□□ 0.29
UBXN4-203ENST00000416538 RFC5P40937 340 aa16.87■□□□□ 0.29
UBXN4-203ENST00000416538 TXKP42681 527 aa16.87■□□□□ 0.29
UBXN4-203ENST00000416538 UBXN11Q5T124 520 aa16.87■□□□□ 0.29
UBXN4-203ENST00000416538 TWF2Q6IBS0 349 aaKnown RBP16.87■□□□□ 0.29
UBXN4-203ENST00000416538 CATSPER4Q7RTX7 472 aa16.87■□□□□ 0.29
UBXN4-203ENST00000416538 FERMT3Q86UX7 667 aa16.87■□□□□ 0.29
UBXN4-203ENST00000416538 TPH2Q8IWU9 490 aa16.87■□□□□ 0.29
UBXN4-203ENST00000416538 GJD3Q8N144 294 aa16.87■□□□□ 0.29
UBXN4-203ENST00000416538 SLC39A11Q8N1S5 342 aa16.87■□□□□ 0.29
UBXN4-203ENST00000416538 BCL7CQ8WUZ0 217 aaPredicted RBP16.87■□□□□ 0.29
UBXN4-203ENST00000416538 FAM105AQ9NUU6 356 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms