RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 FOSBP53539 338 aa13□□□□□ -0.33
USP4-204ENST00000416417 TMC7Q7Z402 723 aa13□□□□□ -0.33
USP4-204ENST00000416417 LRRC43Q8N309 656 aa13□□□□□ -0.33
USP4-204ENST00000416417 NLRP4Q96MN2 994 aa13□□□□□ -0.33
USP4-204ENST00000416417 POP1Q99575 1024 aaKnown RBP13□□□□□ -0.33
USP4-204ENST00000416417 PHF20Q9BVI0 1012 aa13□□□□□ -0.33
USP4-204ENST00000416417 GCOM2Q9BZD3 368 aaPredicted RBP13□□□□□ -0.33
USP4-204ENST00000416417 TM6SF1Q9BZW5 370 aa13□□□□□ -0.33
USP4-204ENST00000416417 SLKQ9H2G2 1235 aaPredicted RBP13□□□□□ -0.33
USP4-204ENST00000416417 RNF216Q9NWF9 866 aaPredicted RBP13□□□□□ -0.33
USP4-204ENST00000416417 TRIOO75962 3097 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 IGKV6-21A0A0C4DH24 114 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 A0A0U1RQF3 1178 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 HOXA2O43364 376 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 CTDNEP1O95476 244 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 PLCB3Q01970 1234 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 HERC4Q5GLZ8 1057 aaPredicted RBP12.99□□□□□ -0.33
USP4-204ENST00000416417 CPLX2Q6PUV4 134 aaKnown RBP12.99□□□□□ -0.33
USP4-204ENST00000416417 PIK3AP1Q6ZUJ8 805 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 KRT25Q7Z3Z0 450 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 NECAB1Q8N987 351 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 RDM1Q8NG50 284 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 AUTS2Q8WXX7 1259 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 C22orf23Q9BZE7 217 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 SPG21Q9NZD8 308 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 PUF60Q9UHX1 559 aaKnown RBP12.99□□□□□ -0.33
USP4-204ENST00000416417 VAV3Q9UKW4 847 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 PIN4Q9Y237 131 aaKnown RBP12.99□□□□□ -0.33
USP4-204ENST00000416417 INPP5FQ9Y2H2 1132 aa12.99□□□□□ -0.33
USP4-204ENST00000416417 CCDC194A0A1B0GVG4 234 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 LOC730098B7Z3J9 87 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 ZBTB39O15060 712 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 CCNT1O60563 726 aaKnown RBP12.98□□□□□ -0.33
USP4-204ENST00000416417 MAFO75444 373 aaPredicted RBP12.98□□□□□ -0.33
USP4-204ENST00000416417 LARGE1O95461 756 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 HOXD11P31277 338 aaPredicted RBP12.98□□□□□ -0.33
USP4-204ENST00000416417 DNM2P50570 870 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 BCAR1P56945 870 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 PSMC5P62195 406 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 TWF2Q6IBS0 349 aaKnown RBP12.98□□□□□ -0.33
USP4-204ENST00000416417 ANKRD54Q6NXT1 300 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 KANK3Q6NY19 840 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 SYCE2Q6PIF2 218 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 TMEM173Q86WV6 379 aaPredicted RBP12.98□□□□□ -0.33
USP4-204ENST00000416417 SLC39A11Q8N1S5 342 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 HAS1Q92839 578 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 TMEM143Q96AN5 459 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 GBP3Q9H0R5 595 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 RGL1Q9NZL6 768 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 B4GALT3O60512 393 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 ZC3H11AO75152 810 aaKnown RBP eCLIP12.98□□□□□ -0.33
USP4-204ENST00000416417 WEE2P0C1S8 567 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 PHKA2P46019 1235 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 KRT17Q04695 432 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 KCNC3Q14003 757 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 NCAPH2Q6IBW4 605 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 MOXD1Q6UVY6 613 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 CATSPER4Q7RTX7 472 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 NEK8Q86SG6 692 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 POTEDQ86YR6 584 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 FEZF2Q8TBJ5 459 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 BCL7CQ8WUZ0 217 aaPredicted RBP12.98□□□□□ -0.33
USP4-204ENST00000416417 CEP170P1Q96L14 293 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 PHF7Q9BWX1 381 aaPredicted RBP12.98□□□□□ -0.33
USP4-204ENST00000416417 S1PR5Q9H228 398 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 MINDY3Q9H8M7 445 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 KCNMB3Q9NPA1 279 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 CYP26B1Q9NR63 512 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 LZTS1Q9Y250 596 aa12.98□□□□□ -0.33
USP4-204ENST00000416417 PFKFB2O60825 505 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 EOMESO95936 686 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 SRGAP2CP0DJJ0 459 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 SFPQP23246 707 aaKnown RBP eCLIP12.97□□□□□ -0.33
USP4-204ENST00000416417 QARSP47897 775 aaKnown RBP12.97□□□□□ -0.33
USP4-204ENST00000416417 AFF1P51825 1210 aaKnown RBP12.97□□□□□ -0.33
USP4-204ENST00000416417 AK2P54819 239 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 CYP4A11Q02928 519 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 NR5A1Q13285 461 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 CTTNQ14247 550 aaKnown RBP12.97□□□□□ -0.33
USP4-204ENST00000416417 GALNT17Q6IS24 598 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 PDE12Q6L8Q7 609 aaKnown RBP12.97□□□□□ -0.33
USP4-204ENST00000416417 ALYREFQ86V81 257 aaKnown RBP12.97□□□□□ -0.33
USP4-204ENST00000416417 C12orf76Q8N812 135 aaPredicted RBP12.97□□□□□ -0.33
USP4-204ENST00000416417 SUSD6Q92537 303 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 EDAQ92838 391 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 DYDC2Q96IM9 177 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 FBXL18Q96ME1 805 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 CDCA3Q99618 268 aaPredicted RBP12.97□□□□□ -0.33
USP4-204ENST00000416417 TSHZ2Q9NRE2 1034 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 DACT1Q9NYF0 836 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 ORC3Q9UBD5 711 aaPredicted RBP12.97□□□□□ -0.33
USP4-204ENST00000416417 DNAJB4Q9UDY4 337 aa12.97□□□□□ -0.33
USP4-204ENST00000416417 A0A087WWV3 80 aa12.96□□□□□ -0.33
USP4-204ENST00000416417 C2orf71A6NGG8 1288 aa12.96□□□□□ -0.33
USP4-204ENST00000416417 EPB41L2O43491 1005 aaKnown RBP12.96□□□□□ -0.33
USP4-204ENST00000416417 MARCH6O60337 910 aa12.96□□□□□ -0.33
USP4-204ENST00000416417 CLASP2O75122 1294 aaKnown RBP12.96□□□□□ -0.33
USP4-204ENST00000416417 CXCL14O95715 111 aa12.96□□□□□ -0.33
USP4-204ENST00000416417 PPM1AP35813 382 aa12.96□□□□□ -0.33
USP4-204ENST00000416417 PPP2R5CQ13362 524 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms