RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 GULP1Q9UBP9 304 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 ASAP1Q9ULH1 1129 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 ACTL7BQ9Y614 415 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 SCN11AQ9UI33 1791 aa3.06□□□□□ -1.92
MCF2-204ENST00000414978 ELOA3CA0A087WX78 387 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 ELOA3DA6NLF2 546 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 CBX4O00257 560 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 FANCGO15287 622 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 ADH5P11766 374 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 HNRNPLP14866 589 aaKnown RBP eCLIP3.05□□□□□ -1.92
MCF2-204ENST00000414978 PEX2P28328 305 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 PRIM2P49643 509 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 GRM1Q13255 1194 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 TAF5Q15542 800 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 CDC37Q16543 378 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 ELOA3BQ3SY89 546 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 TMEM201Q5SNT2 666 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 MYCT1Q8N699 235 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 CHST14Q8NCH0 376 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 ELOA3Q8NG57 546 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 ZNF507Q8TCN5 953 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 JADE3Q92613 823 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 ELF4Q99607 663 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 NMRK2Q9NPI5 230 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 DMRT3Q9NQL9 472 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 CCM2LQ9NUG4 571 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 MSRAQ9UJ68 235 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 ITGB1BP2Q9UKP3 347 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 ZNF646O15015 1829 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 MEGF6O75095 1541 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 AKAP11Q9UKA4 1901 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 COL11A2P13942 1736 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 AQP7O14520 342 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 GAS2O43903 313 aaKnown RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 EFCAB14O75071 495 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 ALDH2P05091 517 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 HSPA8P11142 646 aaKnown RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 CNTFP26441 200 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 MAN2A2P49641 1150 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 TGFB2P61812 414 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 RNFT1Q5M7Z0 435 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 ZKSCAN2Q63HK3 967 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 PPP4R3AQ6IN85 833 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 TBC1D1Q86TI0 1168 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 SPNS2Q8IVW8 549 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 RNF214Q8ND24 703 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 RCBTB1Q8NDN9 531 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 SLC35G2Q8TBE7 412 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 VWCEQ96DN2 955 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 ZNF496Q96IT1 587 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 MRGPRX3Q96LB0 322 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 CPA4Q9UI42 421 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 PCDHGB2Q9Y5G2 931 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 NPHP3-ACAD11A0A0J9YXS1 232 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 MEFVO15553 781 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 SART1O43290 800 aaKnown RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 FRS3O43559 492 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 ZEB2O60315 1214 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 SLITRK5O94991 958 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 GNAT1P11488 350 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 GRK2P25098 689 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 ADD2P35612 726 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 CTSKP43235 329 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 NMIQ13287 307 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 FAM47CQ5HY64 1035 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 FAM182BQ5T319 152 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 CEP68Q76N32 757 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 MRPL41Q8IXM3 137 aaKnown RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 ARHGEF39Q8N4T4 335 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 CRACR2BQ8N4Y2 399 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 TOP6BLQ8N6T0 577 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 FAM181AQ8N9Y4 354 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 TMEM169Q96HH4 297 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 CDC5LQ99459 802 aaKnown RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 KCNF1Q9H3M0 494 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 CLDND1Q9NY35 253 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 GGA3Q9NZ52 723 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 CRIM1Q9NZV1 1036 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 EVLQ9UI08 416 aaPredicted RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 STARD13Q9Y3M8 1113 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 PCDHGC5Q9Y5F6 944 aa3.05□□□□□ -1.92
MCF2-204ENST00000414978 DDX60Q8IY21 1712 aaKnown RBP3.05□□□□□ -1.92
MCF2-204ENST00000414978 IGSF1Q8N6C5 1336 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 PASKQ96RG2 1323 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 KIF20BQ96Q89 1820 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 A0A0G2JS52 829 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 NCK2O43639 380 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 USP2O75604 605 aaPredicted RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 LEFTY1O75610 366 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 SETSIPP0DME0 302 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 NCAM1P13591 858 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 TNFAIP3P21580 790 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 CYP2C19P33261 490 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 GEMIN4P57678 1058 aaKnown RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 ERVK-24P63145 666 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 KRT83P78385 493 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 MOGSQ13724 837 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 LAMC2Q13753 1193 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 KIF4BQ2VIQ3 1234 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms