RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PPP2R2AP63151 447 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 SRLQ86TD4 932 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 ZNF507Q8TCN5 953 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 ARPP21Q9UBL0 812 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 CSADQ9Y600 493 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 LRRC74AQ0VAA2 488 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 FAM133AQ8N9E0 248 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 MLPHQ9BV36 600 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 DCTPP1Q9H773 170 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 ZWILCHQ9H900 591 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 ARFIP2P53365 341 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 COG2Q14746 738 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 CDC37Q16543 378 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 PAGR1Q9BTK6 254 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 UBE2TQ9NPD8 197 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 KRT84Q9NSB2 600 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 HSPA13P48723 471 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 MAGOHP61326 146 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 MEI1Q5TIA1 1274 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 PCDHA13Q9Y5I0 950 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 TOM1O60784 492 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 CUL4AQ13619 759 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 FASTKD1Q53R41 847 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 UNC45BQ8IWX7 931 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 LINS1Q8NG48 757 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 MYL10Q9BUA6 226 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 VPS11Q9H270 941 aa14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 DHX36Q9H2U1 1008 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 SCAF11Q99590 1463 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-204ENST00000413716 STX7O15400 261 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 CCDC184Q52MB2 194 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 SPDYAQ5MJ70 313 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 HEXIM2Q96MH2 286 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 IMPAD1Q9NX62 359 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 FGGP02679 453 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 HIBADHP31937 336 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 NCKAP1LP55160 1127 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 PRAMEP78395 509 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 RBL2Q08999 1139 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 SGSM1Q2NKQ1 1148 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 SYMPKQ92797 1274 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 PARD6BQ9BYG5 372 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 PCDHB15Q9Y5E8 787 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 UBAP1LF5GYI3 381 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 RGS20O76081 388 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 ATP12AP54707 1039 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 CLASP2O75122 1294 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 RFX8Q6ZV50 586 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 MICU2Q8IYU8 434 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 WDR17Q8IZU2 1322 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 ABCC5O15440 1437 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 FTCDO95954 541 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 SLC16A1P53985 500 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 USP39Q53GS9 565 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 SLC25A24Q6NUK1 477 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 KRT78Q8N1N4 520 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 RBM41Q96IZ5 413 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 ACCSQ96QU6 501 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 ANKRD12Q6UB98 2062 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 GFPT2O94808 682 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 ZSCAN20P17040 1043 aaPredicted RBP14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 MIS18BP1Q6P0N0 1132 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 HEATR4Q86WZ0 1026 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 EXD1Q8NHP7 514 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 C17orf80Q9BSJ5 609 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 SMIM31A0A1B0GVY4 71 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 TNFAIP1Q13829 316 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 PIPSLA2A3N6 862 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 ALDH18A1P54886 795 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 PLIN5Q00G26 463 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 TCP10Q12799 353 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 PPP4R3CPQ6ZMV5 832 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 ZSCAN10Q96SZ4 725 aaPredicted RBP14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 SLITRK6Q9H5Y7 841 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 TFCP2L1Q9NZI6 479 aa14.13□□□□□ -0.15
CCDC88A-204ENST00000413716 ASNA1O43681 348 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 ZNF189O75820 626 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 FLT3P36888 993 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 CDO1Q16878 200 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 TMEM154Q6P9G4 183 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 SLC7A3Q8WY07 619 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 ZNF274Q96GC6 653 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 NACC1Q96RE7 527 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 USP40Q9NVE5 1235 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 PRKAG2Q9UGJ0 569 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 M0R2C6 588 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 IL6P05231 212 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 PABPC4Q13310 644 aaKnown RBP eCLIP14.12□□□□□ -0.156e-6■■■■■ 28.1
CCDC88A-204ENST00000413716 EFHBQ8N7U6 833 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 LMBRD1Q9NUN5 540 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 MRPL50Q8N5N7 158 aaKnown RBP14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 ZNF496Q96IT1 587 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 FARP1Q9Y4F1 1045 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 CFAP99D6REC4 459 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 PDE5AO76074 875 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 ANKRD13CQ8N6S4 541 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 INTS13Q9NVM9 706 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 KIAA1024Q9UPX6 916 aa14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 PNMA6AP0CW24 399 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-204ENST00000413716 MAPKAPK2P49137 400 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms