RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SAP30BPQ9UHR5 308 aaKnown RBP4.94□□□□□ -1.62
HMGB1-204ENST00000399489 FRMD4BQ9Y2L6 1034 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 PTPN22Q9Y2R2 807 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 SLC45A1Q9Y2W3 748 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 GIT1Q9Y2X7 761 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 ABCC9O60706 1549 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 F5H423 210 aaPredicted RBP4.94□□□□□ -1.62
HMGB1-204ENST00000399489 FIBPO43427 364 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 OPA1O60313 960 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 MAFKO60675 156 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 SNX2O60749 519 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 ASLP04424 464 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 CYP1A1P04798 512 aaPredicted RBP4.94□□□□□ -1.62
HMGB1-204ENST00000399489 PYGMP11217 842 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 TNFAIP3P21580 790 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 RECQLP46063 649 aaPredicted RBP4.94□□□□□ -1.62
HMGB1-204ENST00000399489 ADAM17P78536 824 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 MBLAC2Q68D91 279 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 MCTP2Q6DN12 878 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 KRTAP5-11Q6L8G4 156 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 CFAP161Q6P656 301 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 C16orf54Q6UWD8 224 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 FGD2Q7Z6J4 655 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 FRS2Q8WU20 508 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 BTN2A2Q8WVV5 523 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 LCORQ96JN0 433 aaPredicted RBP4.94□□□□□ -1.62
HMGB1-204ENST00000399489 CLIC6Q96NY7 704 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 KCNG1Q9UIX4 513 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 X6R8D5 127 aa4.94□□□□□ -1.62
HMGB1-204ENST00000399489 C9orf118A6NHY6 69 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 H7BY64 318 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 HGSO14964 777 aaPredicted RBP4.93□□□□□ -1.62
HMGB1-204ENST00000399489 MT-CO1P00395 513 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 LTFP02788 710 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 PTMAP06454 111 aaKnown RBP4.93□□□□□ -1.62
HMGB1-204ENST00000399489 SLC5A1P13866 664 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 FPR2P25090 351 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 BCL6P41182 706 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 TM4SF4P48230 202 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 RXRGP48443 463 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 USP14P54578 494 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 EIF5P55010 431 aaKnown RBP4.93□□□□□ -1.62
HMGB1-204ENST00000399489 PPP2R2AP63151 447 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 LSAMPQ13449 338 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 HSP90AA2PQ14568 343 aaPredicted RBP4.93□□□□□ -1.62
HMGB1-204ENST00000399489 CPZQ66K79 652 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 LDHAL6AQ6ZMR3 332 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 CHST15Q7LFX5 561 aaPredicted RBP4.93□□□□□ -1.62
HMGB1-204ENST00000399489 TXNDC5Q8NBS9 432 aaKnown RBP4.93□□□□□ -1.62
HMGB1-204ENST00000399489 OR2W6PQ8NHA6 318 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 NUP88Q99567 741 aaPredicted RBP4.93□□□□□ -1.62
HMGB1-204ENST00000399489 MYD88Q99836 296 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 NAA15Q9BXJ9 866 aaKnown RBP4.93□□□□□ -1.62
HMGB1-204ENST00000399489 ALDH8A1Q9H2A2 487 aaPredicted RBP4.93□□□□□ -1.62
HMGB1-204ENST00000399489 SLC12A5Q9H2X9 1139 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 FNIP2Q9P278 1114 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 NDOR1Q9UHB4 597 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 ZNF652Q9Y2D9 606 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 CLSPNQ9HAW4 1339 aa4.93□□□□□ -1.62
HMGB1-204ENST00000399489 A0A1W2PRQ8 180 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 BICDL2A1A5D9 508 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 M0R2C6 588 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 DDX3XO00571 662 aaKnown RBP eCLIP4.92□□□□□ -1.629e-10■■□□□ 13.2
HMGB1-204ENST00000399489 FGFR1P11362 822 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 RHCEP18577 417 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 CCND1P24385 295 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 IGFALSP35858 605 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 LTBRP36941 435 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 STAT5AP42229 794 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 ITGA1P56199 1179 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 RHDQ02161 417 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 IQSEC1Q6DN90 963 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 PPIL6Q8IXY8 311 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 CMTR2Q8IYT2 770 aaKnown RBP4.92□□□□□ -1.62
HMGB1-204ENST00000399489 FAM43AQ8N2R8 423 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 FAM26EQ8N5C1 309 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 PGBD4Q96DM1 585 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 TOE1Q96GM8 510 aaKnown RBP4.92□□□□□ -1.62
HMGB1-204ENST00000399489 SCLYQ96I15 445 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 CDK5RAP3Q96JB5 506 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 TBATAQ96M53 351 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 TTC14Q96N46 770 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.92□□□□□ -1.62
HMGB1-204ENST00000399489 L2HGDHQ9H9P8 463 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 RSAD1Q9HA92 442 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 INVSQ9Y283 1065 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 PCDHB4Q9Y5E5 795 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.92□□□□□ -1.62
HMGB1-204ENST00000399489 A6NCN8 305 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 DGKIO75912 1065 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 RPN1P04843 607 aaKnown RBP4.92□□□□□ -1.62
HMGB1-204ENST00000399489 ITGAVP06756 1048 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 PABPC1P11940 636 aaKnown RBP4.92□□□□□ -1.62
HMGB1-204ENST00000399489 ZKSCAN1P17029 563 aaPredicted RBP4.92□□□□□ -1.62
HMGB1-204ENST00000399489 PCBP2Q15366 365 aaKnown RBP eCLIP4.92□□□□□ -1.62
HMGB1-204ENST00000399489 CFAP100Q494V2 611 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 TBC1D10BQ4KMP7 808 aaPredicted RBP4.92□□□□□ -1.62
HMGB1-204ENST00000399489 ATP13A4Q4VNC1 1196 aa4.92□□□□□ -1.62
HMGB1-204ENST00000399489 FAM133BQ5BKY9 247 aaKnown RBP4.92□□□□□ -1.62
HMGB1-204ENST00000399489 B3GNT9Q6UX72 402 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms