RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ABCD1P33897 745 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 PPP2R5CQ13362 524 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 IZUMO2Q6UXV1 221 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 GALNT15Q8N3T1 639 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 SLC35G2Q8TBE7 412 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 C18orf8Q96DM3 657 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 NUF2Q9BZD4 464 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 CYP4F11Q9HBI6 524 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 METTL14Q9HCE5 456 aaKnown RBP9.97□□□□□ -0.81
COL28A1-201ENST00000399429 TTC7AQ9ULT0 858 aaPredicted RBP9.97□□□□□ -0.81
COL28A1-201ENST00000399429 AGTPBP1Q9UPW5 1226 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 TSC22D4Q9Y3Q8 395 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 USP6P35125 1406 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 MYO3AQ8NEV4 1616 aa9.97□□□□□ -0.81
COL28A1-201ENST00000399429 SPECC1L-ADORA2AF8WAN1 911 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 HNRNPRO43390 633 aaKnown RBP9.96□□□□□ -0.81
COL28A1-201ENST00000399429 ADCY3O60266 1144 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 ENO1P06733 434 aaKnown RBP9.96□□□□□ -0.81
COL28A1-201ENST00000399429 SLC9A1P19634 815 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 ADCY7P51828 1080 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 PABPC4Q13310 644 aaKnown RBP eCLIP9.96□□□□□ -0.81
COL28A1-201ENST00000399429 Q4G0T1 1027 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 TAF1BQ53T94 588 aaPredicted RBP9.96□□□□□ -0.81
COL28A1-201ENST00000399429 ZNF746Q6NUN9 644 aaPredicted RBP9.96□□□□□ -0.81
COL28A1-201ENST00000399429 C6orf89Q6UWU4 347 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 RNF207Q6ZRF8 634 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 ARMCX6Q7L4S7 300 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 THEMISQ8N1K5 641 aaPredicted RBP9.96□□□□□ -0.81
COL28A1-201ENST00000399429 PPM1KQ8N3J5 372 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 TTC8Q8TAM2 541 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.96□□□□□ -0.81
COL28A1-201ENST00000399429 ZNF653Q96CK0 615 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 ACSBG1Q96GR2 724 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 MPP4Q96JB8 637 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 STK17AQ9UEE5 414 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 GSG1L2A8MUP6 293 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 CDH16O75309 829 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 ZNF268Q14587 947 aaPredicted RBP9.96□□□□□ -0.81
COL28A1-201ENST00000399429 FIGNQ5HY92 759 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 TRIM59Q8IWR1 403 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 ZSCAN29Q8IWY8 852 aaPredicted RBP9.96□□□□□ -0.81
COL28A1-201ENST00000399429 MYLK2Q9H1R3 596 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 PICK1Q9NRD5 415 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 SLC5A4Q9NY91 659 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 ANKIB1Q9P2G1 1089 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 CHORDC1Q9UHD1 332 aaPredicted RBP9.96□□□□□ -0.81
COL28A1-201ENST00000399429 AGAP1Q9UPQ3 857 aa9.96□□□□□ -0.81
COL28A1-201ENST00000399429 DEPDC5O75140 1603 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 ARHGAP10A1A4S6 786 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 B2RBV5 119 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 LIN7AO14910 233 aaPredicted RBP9.96□□□□□ -0.82
COL28A1-201ENST00000399429 MT-ND3P03897 115 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 CYP4A11Q02928 519 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 MCL1Q07820 350 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 ZBTB17Q13105 803 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 RABL6Q3YEC7 729 aaPredicted RBP9.96□□□□□ -0.82
COL28A1-201ENST00000399429 MAP3K21Q5TCX8 1036 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 MTDHQ86UE4 582 aaKnown RBP9.96□□□□□ -0.82
COL28A1-201ENST00000399429 FAM228AQ86W67 206 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 ZNF507Q8TCN5 953 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 DDX17Q92841 729 aaKnown RBP9.96□□□□□ -0.82
COL28A1-201ENST00000399429 FNBP1Q96RU3 617 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 MTRQ99707 1265 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 TRABDQ9H4I3 376 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 PCDHGC5Q9Y5F6 944 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 UNC5CO95185 931 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 SP100P23497 879 aaPredicted RBP9.96□□□□□ -0.82
COL28A1-201ENST00000399429 PHBP35232 272 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 PHEXP78562 749 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 RASGRF1Q13972 1273 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 PFKFB3Q16875 520 aaPredicted RBP9.96□□□□□ -0.82
COL28A1-201ENST00000399429 APTXQ7Z2E3 356 aaKnown RBP9.96□□□□□ -0.82
COL28A1-201ENST00000399429 CCDC125Q86Z20 511 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 SRBD1Q8N5C6 995 aaKnown RBP9.96□□□□□ -0.82
COL28A1-201ENST00000399429 ICA1LQ8NDH6 482 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 TPCN2Q8NHX9 752 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 ACTRT1Q8TDG2 376 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 SCINQ9Y6U3 715 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 KNDC1Q76NI1 1749 aa9.96□□□□□ -0.82
COL28A1-201ENST00000399429 FAM196BA6NMK8 535 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 H3BRJ5 948 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 PDE5AO76074 875 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 PCCAP05165 728 aaPredicted RBP9.95□□□□□ -0.82
COL28A1-201ENST00000399429 TMED10P49755 219 aaKnown RBP9.95□□□□□ -0.82
COL28A1-201ENST00000399429 KRT17Q04695 432 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 MAPK7Q13164 816 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 SH3RF1Q7Z6J0 888 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 BBOF1Q8ND07 529 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 RFFLQ8WZ73 363 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 TBC1D10AQ9BXI6 508 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 ARHGEF10LQ9HCE6 1279 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 DIS3Q9Y2L1 958 aaKnown RBP9.95□□□□□ -0.82
COL28A1-201ENST00000399429 GOLGA8SH3BPF8 625 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 GOLGA8MH3BSY2 632 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 GYG1P46976 350 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 FOXO4P98177 505 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 DSG1Q02413 1049 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 CYTH1Q15438 398 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 TRIP10Q15642 601 aa9.95□□□□□ -0.82
COL28A1-201ENST00000399429 KRT80Q6KB66 452 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms