RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 STK24Q9Y6E0 443 aa13.77□□□□□ -0.2
SHMT1-205ENST00000395684 IGLV3-22A0A075B6J6 115 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 GAP43P17677 238 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 IFFO1Q0D2I5 559 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 SLC15A2Q16348 729 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 AADACL2Q6P093 401 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 CCDC121Q6ZUS5 278 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 TPH2Q8IWU9 490 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 RAB17Q9H0T7 212 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 FRMPD4Q14CM0 1322 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 LTBP1Q14766 1721 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 ADRA2BP18089 450 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 ZNF76P36508 570 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 ICA1Q05084 483 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 PLCB4Q15147 1175 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 NFIL3Q16649 462 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 PHLDB3Q6NSJ2 640 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 SH3BP5LQ7L8J4 393 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 OTOP1Q7RTM1 612 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 TATDN2Q93075 761 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 DYDC2Q96IM9 177 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 KCNQ5Q9NR82 932 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 TMOD4Q9NZQ9 345 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 PNMA2Q9UL42 364 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 DAAM1Q9Y4D1 1078 aa13.77□□□□□ -0.21
SHMT1-205ENST00000395684 KLRG2A4D1S0 409 aaPredicted RBP13.76□□□□□ -0.21
SHMT1-205ENST00000395684 CHMP2AO43633 222 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 PPP1R12BO60237 982 aaPredicted RBP13.76□□□□□ -0.21
SHMT1-205ENST00000395684 NDUFB10O96000 172 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 CRKP46108 304 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 CYP2J2P51589 502 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 IKQ13123 557 aaPredicted RBP13.76□□□□□ -0.21
SHMT1-205ENST00000395684 DRP2Q13474 957 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 ARHGAP44Q17R89 818 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 ZNF720Q7Z2F6 126 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 MKNK1Q9BUB5 465 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 WDR18Q9BV38 432 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 INTS2Q9H0H0 1204 aaKnown RBP13.76□□□□□ -0.21
SHMT1-205ENST00000395684 PARVGQ9HBI0 331 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 KLC4Q9NSK0 619 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 SEPT11Q9NVA2 429 aaKnown RBP13.76□□□□□ -0.21
SHMT1-205ENST00000395684 DMAC2Q9NW81 257 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 APEX2Q9UBZ4 518 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 DIS3Q9Y2L1 958 aaKnown RBP13.76□□□□□ -0.21
SHMT1-205ENST00000395684 SNX24Q9Y343 169 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 FOXN3O00409 490 aaPredicted RBP13.76□□□□□ -0.21
SHMT1-205ENST00000395684 GDF11O95390 407 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 CYP3A4P08684 503 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 TNFAIP3P21580 790 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 EIF3BP55884 814 aaKnown RBP13.76□□□□□ -0.21
SHMT1-205ENST00000395684 SYDE2Q5VT97 1194 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 CD248Q9HCU0 757 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 SLC40A1Q9NP59 571 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 AGPAT3Q9NRZ7 376 aa13.76□□□□□ -0.21
SHMT1-205ENST00000395684 ANKRD62A6NC57 917 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 LRRN2O75325 713 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 VCAM1P19320 739 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 DRD4P21917 467 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 PLTPP55058 493 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 ANKRD20A8PQ5CZ79 823 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 UBAP2Q5T6F2 1119 aaKnown RBP13.75□□□□□ -0.21
SHMT1-205ENST00000395684 ZDHHC24Q6UX98 284 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 JAMLQ86YT9 394 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 RDH13Q8NBN7 331 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 FBXO25Q8TCJ0 367 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 RNF25Q96BH1 459 aaPredicted RBP13.75□□□□□ -0.21
SHMT1-205ENST00000395684 CCDC114Q96M63 670 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 GOPCQ9HD26 462 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 PI4KBQ9UBF8 816 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 FAM198AQ9UFP1 575 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 BCS1LQ9Y276 419 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 ALG6Q9Y672 507 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 LY75O60449 1722 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 GOLGA6L7A0A1B0GV03 622 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 KIAA0391O15091 583 aaKnown RBP13.75□□□□□ -0.21
SHMT1-205ENST00000395684 PMS2P54278 862 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 JAG1P78504 1218 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 KIAA1755Q5JYT7 1200 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 SPDYCQ5MJ68 293 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 ERMARDQ5T6L9 678 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 TATDN1Q6P1N9 297 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 CACNA2D3Q8IZS8 1091 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 LMO3Q8TAP4 145 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 SLC20A1Q8WUM9 679 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 C18orf8Q96DM3 657 aa13.75□□□□□ -0.21
SHMT1-205ENST00000395684 PABPC3Q9H361 631 aaKnown RBP13.75□□□□□ -0.21
SHMT1-205ENST00000395684 WRAP73Q9P2S5 460 aaPredicted RBP13.75□□□□□ -0.21
SHMT1-205ENST00000395684 QSER1Q2KHR3 1735 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 GOLGA6L10A0A0M3HER8 536 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 POLRMTO00411 1230 aaKnown RBP13.74□□□□□ -0.21
SHMT1-205ENST00000395684 NUDT17P0C025 328 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 MAPK7Q13164 816 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 GKAP1Q5VSY0 366 aaPredicted RBP13.74□□□□□ -0.21
SHMT1-205ENST00000395684 CPLX4Q7Z7G2 160 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 FAM178BQ8IXR5 827 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 ZDHHC14Q8IZN3 488 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 KRT35Q92764 455 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 GMCL1Q96IK5 515 aa13.74□□□□□ -0.21
SHMT1-205ENST00000395684 XPO6Q96QU8 1125 aaKnown RBP13.74□□□□□ -0.21
SHMT1-205ENST00000395684 NAP1L3Q99457 506 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms