RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CCDC134Q9H6E4 229 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 SNX12Q9UMY4 172 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 PITPNM2Q9BZ72 1349 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 GOLGA8IPA6NC78 632 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 MAGEA13PA6NCF6 341 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 GOLGA8JA6NMD2 632 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 GNPATO15228 680 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 AKAP10O43572 662 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 NECTIN1Q15223 517 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 LRIG3Q6UXM1 1119 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 LRRC31Q6UY01 552 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 TRMT2AQ8IZ69 625 aaKnown RBP12.6□□□□□ -0.39
SYNPO-202ENST00000394243 STAG2Q8N3U4 1231 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 ZNF555Q8NEP9 628 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 DONSONQ9NYP3 566 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 PDP2Q9P2J9 529 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 PAMP19021 973 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 DEFA1P59665 94 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 DEFA3P59666 94 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 CEP78Q5JTW2 689 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 DEPDC1Q5TB30 811 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 MARCH10Q8NA82 808 aaPredicted RBP12.6□□□□□ -0.39
SYNPO-202ENST00000394243 INPP5DQ92835 1189 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.6□□□□□ -0.39
SYNPO-202ENST00000394243 MTBPQ96DY7 904 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 TSSK1BQ9BXA7 367 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 HEY1Q9Y5J3 304 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 ZSCAN9O15535 394 aaPredicted RBP12.6□□□□□ -0.39
SYNPO-202ENST00000394243 FAM107AO95990 144 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 FOSP01100 380 aaPredicted RBP12.6□□□□□ -0.39
SYNPO-202ENST00000394243 MAP3K10Q02779 954 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 C1orf54Q8WWF1 131 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 RNPC3Q96LT9 517 aaKnown RBP12.6□□□□□ -0.39
SYNPO-202ENST00000394243 NUP85Q9BW27 656 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 BRIP1Q9BX63 1249 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 CCDC87Q9NVE4 849 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 IVNS1ABPQ9Y6Y0 642 aa12.6□□□□□ -0.39
SYNPO-202ENST00000394243 NBNO60934 754 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 GNL1P36915 607 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 DHX34Q14147 1143 aaKnown RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 DMC1Q14565 340 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 LONRF1Q17RB8 773 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 TJAP1Q5JTD0 557 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 IZUMO3Q5VZ72 239 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 SCARA5Q6ZMJ2 495 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 CCDC103Q8IW40 242 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 SNX19Q92543 992 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 CNBD2Q96M20 576 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 NACC1Q96RE7 527 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 BEGAINQ9BUH8 593 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 APOL6Q9BWW8 343 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 BRD8Q9H0E9 1235 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 HACD3Q9P035 362 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 SMAD1Q15797 465 aaKnown RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 ATP11CQ8NB49 1132 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 PARD3BQ8TEW8 1205 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 CASP10Q92851 521 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 ADAM33Q9BZ11 813 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 ADAM22Q9P0K1 906 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 M0R3G1 203 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 HADHAP40939 763 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 PPP6R3Q5H9R7 873 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 RSRC2Q7L4I2 434 aaKnown RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 TMA16Q96EY4 203 aaKnown RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 PRPF18Q99633 342 aaKnown RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 UTP6Q9NYH9 597 aaKnown RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 STMN3Q9NZ72 180 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 ITSN2Q9NZM3 1697 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 URB2Q14146 1524 aaKnown RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 DUOX2Q9NRD8 1548 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 GPATCH8Q9UKJ3 1502 aaKnown RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 C16orf96A6NNT2 1141 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 SMARCA1P28370 1054 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 ZCWPW2Q504Y3 356 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 PASD1Q8IV76 773 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 ZIM3Q96PE6 472 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 COQ7Q99807 217 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 SIKE1Q9BRV8 207 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 KLHL25Q9H0H3 589 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 NEUROG2Q9H2A3 272 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 ZSWIM5Q9P217 1185 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 SKAP2O75563 359 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 ENO3P13929 434 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 INPP5AQ14642 412 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 TTC13Q8NBP0 860 aa12.59□□□□□ -0.39
SYNPO-202ENST00000394243 ZNF564Q8TBZ8 553 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-202ENST00000394243 PRR23D1E9PI22 279 aaPredicted RBP12.58□□□□□ -0.39
SYNPO-202ENST00000394243 PRPF3O43395 683 aaKnown RBP12.58□□□□□ -0.39
SYNPO-202ENST00000394243 PRR23D2P0DMB1 279 aaPredicted RBP12.58□□□□□ -0.39
SYNPO-202ENST00000394243 PTPREP23469 700 aa12.58□□□□□ -0.39
SYNPO-202ENST00000394243 HOXA7P31268 230 aaPredicted RBP12.58□□□□□ -0.39
SYNPO-202ENST00000394243 PAPOLAP51003 745 aaKnown RBP12.58□□□□□ -0.39
SYNPO-202ENST00000394243 RPS6P62753 249 aaKnown RBP12.58□□□□□ -0.39
SYNPO-202ENST00000394243 KRT17Q04695 432 aa12.58□□□□□ -0.39
SYNPO-202ENST00000394243 STAT4Q14765 748 aa12.58□□□□□ -0.39
SYNPO-202ENST00000394243 FRA10AC1Q70Z53 315 aa12.58□□□□□ -0.39
SYNPO-202ENST00000394243 RANBP17Q9H2T7 1088 aaKnown RBP12.58□□□□□ -0.39
SYNPO-202ENST00000394243 F5H423 210 aaPredicted RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms