RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ABCB4P21439 1286 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 POLR2FP61218 127 aaKnown RBP11.2□□□□□ -0.62
COL6A3-205ENST00000392004 LACTBP83111 547 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-205ENST00000392004 SLC20A2Q08357 652 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 FMR1NBQ8N0W7 255 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-205ENST00000392004 TCP11Q8WWU5 503 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 P2RX5Q93086 422 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 CPB2Q96IY4 423 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 CTAGE1Q96RT6 745 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 ZMYND8Q9ULU4 1186 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-205ENST00000392004 BAZ2AQ9UIF9 1905 aaKnown RBP11.2□□□□□ -0.62
COL6A3-205ENST00000392004 HBP1O60381 514 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 DGAT1O75907 488 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 SEC31AO94979 1220 aaKnown RBP11.2□□□□□ -0.62
COL6A3-205ENST00000392004 EYA4O95677 639 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 PRKCBP05771 671 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 SYN1P17600 705 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 LMAN1P49257 510 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 GNG11P61952 73 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 MRPS9P82933 396 aaKnown RBP11.2□□□□□ -0.62
COL6A3-205ENST00000392004 SMC1AQ14683 1233 aaKnown RBP11.2□□□□□ -0.62
COL6A3-205ENST00000392004 LDLRAD1Q5T700 205 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 KCNK18Q7Z418 384 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 NPLOC4Q8TAT6 608 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 MAML3Q96JK9 1138 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 CYP26B1Q9NR63 512 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 TLL2Q9Y6L7 1015 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 IRS2Q9Y4H2 1338 aa11.2□□□□□ -0.62
COL6A3-205ENST00000392004 IGKV6D-41A0A0C4DH26 115 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 GOLGA6L9A6NEM1 432 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 RPA1P27694 616 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 OAZ1P54368 228 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 ZNF200P98182 395 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-205ENST00000392004 FKBP3Q00688 224 aaKnown RBP11.19□□□□□ -0.62
COL6A3-205ENST00000392004 SHCBP1Q8NEM2 672 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 RNF34Q969K3 372 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 TUBGCP2Q9BSJ2 902 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 TUBGCP6Q96RT7 1819 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 IER5Q5VY09 327 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 DSTYKQ6XUX3 929 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 PCSK9Q8NBP7 692 aaKnown RBP11.19□□□□□ -0.62
COL6A3-205ENST00000392004 PSMB7Q99436 277 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 MYO1AQ9UBC5 1043 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 MYH13Q9UKX3 1938 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 KNL1Q8NG31 2342 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 MAFGO15525 162 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 LGALS2P05162 132 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 HSPA1AP0DMV8 641 aaKnown RBP11.19□□□□□ -0.62
COL6A3-205ENST00000392004 HSPA1BP0DMV9 641 aaKnown RBP11.19□□□□□ -0.62
COL6A3-205ENST00000392004 SNHG28P0DPA3 235 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 ZSCAN26Q16670 478 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 TMEM63BQ5T3F8 832 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 METTL16Q86W50 562 aaKnown RBP11.19□□□□□ -0.62
COL6A3-205ENST00000392004 LRRN4CLQ8ND94 238 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 BTNL9Q6UXG8 535 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 OTOP1Q7RTM1 612 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 GPR161Q8N6U8 529 aaKnown RBP11.19□□□□□ -0.62
COL6A3-205ENST00000392004 ENGASEQ8NFI3 743 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 KATNAL1Q9BW62 490 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 SLITRK6Q9H5Y7 841 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 USTQ9Y2C2 406 aa11.19□□□□□ -0.62
COL6A3-205ENST00000392004 TULP2O00295 520 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 STX10O60499 249 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 SLC10A3P09131 477 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 GAP43P17677 238 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 ITGB3BPQ13352 177 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-205ENST00000392004 PDIA5Q14554 519 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 GRIK4Q16099 956 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 UNC13DQ70J99 1090 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 C10orf67Q8IYJ2 551 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 CLEC4DQ8WXI8 215 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 DNAI2Q9GZS0 605 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 GUCA1BQ9UMX6 200 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 TJP1Q07157 1748 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 ZNF233A6NK53 670 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 GRB10Q13322 594 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 AXDND1Q5T1B0 1012 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-205ENST00000392004 RINT1Q6NUQ1 792 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 FAM84AQ96KN4 292 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 BPIFA3Q9BQP9 254 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 HDAC6Q9UBN7 1215 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 HES2Q9Y543 173 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 CEP83Q9Y592 693 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 ASGR1P07306 291 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 HSPA6P17066 643 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 CAPN2P17655 700 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 HOXA7P31268 230 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-205ENST00000392004 BCAR1P56945 870 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 PPP2R3AQ06190 1150 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 MFSD10Q14728 455 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 PTPAQ15257 358 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 PTGISQ16647 500 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 ZNF658Q5TYW1 1059 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-205ENST00000392004 ZNF746Q6NUN9 644 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-205ENST00000392004 KIFAP3Q92845 792 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 KIF12Q96FN5 646 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 C1orf112Q9NSG2 853 aa11.18□□□□□ -0.62
COL6A3-205ENST00000392004 FEZ2Q9UHY8 353 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-205ENST00000392004 MAP1BP46821 2468 aaKnown RBP11.17□□□□□ -0.62
COL6A3-205ENST00000392004 TADA3O75528 432 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms