RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 RBM17Q96I25 401 aaKnown RBP20■□□□□ 0.79
CCDC3-201ENST00000378825 GJD4Q96KN9 370 aaPredicted RBP20■□□□□ 0.79
CCDC3-201ENST00000378825 PABPC3Q9H361 631 aaKnown RBP20■□□□□ 0.79
CCDC3-201ENST00000378825 KCNMB3Q9NPA1 279 aa20■□□□□ 0.79
CCDC3-201ENST00000378825 TMEM110-MUSTN1A8MSY1 372 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 KIAA0391O15091 583 aaKnown RBP19.99■□□□□ 0.79
CCDC3-201ENST00000378825 MMP13P45452 471 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 PPATQ06203 517 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 SPIRE1Q08AE8 756 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 EPM2AIP1Q7L775 607 aaPredicted RBP19.99■□□□□ 0.79
CCDC3-201ENST00000378825 TEX2Q8IWB9 1127 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 MGARPQ8TDB4 240 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 LMBR1Q8WVP7 490 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 DAGLAQ9Y4D2 1042 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 TCRBV7S2A1N4TA0A589 114 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 ZBTB39O15060 712 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 RPL21P46778 160 aaKnown RBP19.99■□□□□ 0.79
CCDC3-201ENST00000378825 KCNJ2P63252 427 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 DRAP1Q14919 205 aaPredicted RBP19.99■□□□□ 0.79
CCDC3-201ENST00000378825 ARHGAP44Q17R89 818 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 TTC27Q6P3X3 843 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 TLDC1Q6P9B6 456 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 OTUD6AQ7L8S5 288 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 NEK9Q8TD19 979 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 BHMT2Q9H2M3 363 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 GRHL1Q9NZI5 618 aa19.99■□□□□ 0.79
CCDC3-201ENST00000378825 ATF5Q9Y2D1 282 aaPredicted RBP19.99■□□□□ 0.79
CCDC3-201ENST00000378825 TRIM49P0CI25 452 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 TRIM49CP0CI26 452 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 EZRP15311 586 aaKnown RBP19.98■□□□□ 0.79
CCDC3-201ENST00000378825 PLCG2P16885 1265 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 MMP14P50281 582 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 SCNN1DP51172 638 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 MRPL12P52815 198 aaKnown RBP19.98■□□□□ 0.79
CCDC3-201ENST00000378825 DENND2CQ68D51 928 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 PPP4R3CPQ6ZMV5 832 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 VPS36Q86VN1 386 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 SEPT12Q8IYM1 358 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 SYCE1Q8N0S2 351 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 CYP2W1Q8TAV3 490 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 THOC1Q96FV9 657 aaKnown RBP19.98■□□□□ 0.79
CCDC3-201ENST00000378825 DDX4Q9NQI0 724 aaKnown RBP19.98■□□□□ 0.79
CCDC3-201ENST00000378825 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.98■□□□□ 0.79
CCDC3-201ENST00000378825 INTS9Q9NV88 658 aaKnown RBP19.98■□□□□ 0.79
CCDC3-201ENST00000378825 A0A0A6YYK5 440 aaPredicted RBP19.98■□□□□ 0.79
CCDC3-201ENST00000378825 TGFB1I1O43294 461 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 CLNS1AP54105 237 aaKnown RBP19.98■□□□□ 0.79
CCDC3-201ENST00000378825 CBWD6Q4V339 395 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 CBWD3Q5JTY5 395 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 KIAA1755Q5JYT7 1200 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 CBWD5Q5RIA9 395 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 PIGWQ7Z7B1 504 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 RFFLQ8WZ73 363 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 GPR88Q9GZN0 384 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 CNOT10Q9H9A5 744 aaKnown RBP19.98■□□□□ 0.79
CCDC3-201ENST00000378825 RGL1Q9NZL6 768 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 SWAP70Q9UH65 585 aa19.98■□□□□ 0.79
CCDC3-201ENST00000378825 A8MUI8 341 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 hCG_1984214I3L0E3 225 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 RGS16O15492 202 aaPredicted RBP19.97■□□□□ 0.79
CCDC3-201ENST00000378825 NMT1P30419 496 aaKnown RBP19.97■□□□□ 0.79
CCDC3-201ENST00000378825 STAT1P42224 750 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 MYO1EQ12965 1108 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 C15orf52Q6ZUT6 534 aaKnown RBP19.97■□□□□ 0.79
CCDC3-201ENST00000378825 ZNF713Q8N859 430 aaPredicted RBP19.97■□□□□ 0.79
CCDC3-201ENST00000378825 CCDC63Q8NA47 563 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 PRCCQ92733 491 aaPredicted RBP19.97■□□□□ 0.79
CCDC3-201ENST00000378825 RAB17Q9H0T7 212 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 DNAJC12Q9UKB3 198 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 SLC12A4Q9UP95 1085 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 TAF1LQ8IZX4 1826 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 PIGOQ8TEQ8 1089 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 POP1Q99575 1024 aaKnown RBP19.97■□□□□ 0.79
CCDC3-201ENST00000378825 ANO3Q9BYT9 981 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 PTPN22Q9Y2R2 807 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 NHSQ6T4R5 1651 aa19.97■□□□□ 0.79
CCDC3-201ENST00000378825 ZBTB5O15062 677 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 UBOX5O94941 541 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 GHRP10912 638 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 SOX5P35711 763 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 KCNJ1P48048 391 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 DOK7Q18PE1 504 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 ARMC9Q7Z3E5 817 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 HOOK3Q86VS8 718 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 KIF2BQ8N4N8 673 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 CERKQ8TCT0 537 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 SLC20A1Q8WUM9 679 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 FAM196BA6NMK8 535 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 MPHOSPH10O00566 681 aaKnown RBP19.96■□□□□ 0.79
CCDC3-201ENST00000378825 PDXKO00764 312 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 NUDT17P0C025 328 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 EIF3BP55884 814 aaKnown RBP19.96■□□□□ 0.79
CCDC3-201ENST00000378825 MAPK7Q13164 816 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 ZNF746Q6NUN9 644 aaPredicted RBP19.96■□□□□ 0.79
CCDC3-201ENST00000378825 CCDC25Q86WR0 208 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 PRELID2Q8N945 189 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 CTNNBL1Q8WYA6 563 aaPredicted RBP19.96■□□□□ 0.79
CCDC3-201ENST00000378825 CHRM1P11229 460 aaPredicted RBP19.96■□□□□ 0.79
CCDC3-201ENST00000378825 VCAM1P19320 739 aa19.96■□□□□ 0.79
CCDC3-201ENST00000378825 PTGIRP43119 386 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms