RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 TTYH1Q9H313 450 aaPredicted RBP14.85□□□□□ -0.03
VPS28-202ENST00000377348 MINDY3Q9H8M7 445 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 IFT122Q9HBG6 1241 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 CHD7Q9P2D1 2997 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 MSRAQ9UJ68 235 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 PCDHA11Q9Y5I1 949 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 MYH15Q9Y2K3 1946 aa14.85□□□□□ -0.03
VPS28-202ENST00000377348 GBF1Q92538 1859 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 LCHNA4D1U4 455 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 SPTLC2O15270 562 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 TLL1O43897 1013 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 SSBP05455 408 aaKnown RBP eCLIP14.84□□□□□ -0.03
VPS28-202ENST00000377348 CA3P07451 260 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 ZNF697Q5TEC3 545 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 DEFB123Q8N688 67 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 KRI1Q8N9T8 703 aaKnown RBP14.84□□□□□ -0.03
VPS28-202ENST00000377348 MCPH1Q8NEM0 835 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 BSNDQ8WZ55 320 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 SYMPKQ92797 1274 aaKnown RBP14.84□□□□□ -0.03
VPS28-202ENST00000377348 TOP1MTQ969P6 601 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 CALML4Q96GE6 196 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 ADAM2Q99965 735 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 RUSC1Q9BVN2 902 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 NT5C3AQ9H0P0 336 aa14.84□□□□□ -0.03
VPS28-202ENST00000377348 TSPYL2Q9H2G4 693 aaPredicted RBP14.84□□□□□ -0.03
VPS28-202ENST00000377348 DENND3A2RUS2 1198 aa14.83□□□□□ -0.04
VPS28-202ENST00000377348 ASAP2O43150 1006 aa14.83□□□□□ -0.04
VPS28-202ENST00000377348 PLCG1P19174 1290 aa14.83□□□□□ -0.04
VPS28-202ENST00000377348 SFPQP23246 707 aaKnown RBP eCLIP14.83□□□□□ -0.04
VPS28-202ENST00000377348 DSC3Q14574 896 aa14.83□□□□□ -0.04
VPS28-202ENST00000377348 MXD4Q14582 209 aaPredicted RBP14.83□□□□□ -0.04
VPS28-202ENST00000377348 ODR4Q5SWX8 454 aa14.83□□□□□ -0.04
VPS28-202ENST00000377348 RINT1Q6NUQ1 792 aa14.83□□□□□ -0.04
VPS28-202ENST00000377348 GPR153Q6NV75 609 aa14.83□□□□□ -0.04
VPS28-202ENST00000377348 SPRED2Q7Z698 418 aa14.83□□□□□ -0.04
VPS28-202ENST00000377348 RASSF8Q8NHQ8 419 aa14.83□□□□□ -0.04
VPS28-202ENST00000377348 MORC2Q9Y6X9 1032 aaPredicted RBP14.83□□□□□ -0.04
VPS28-202ENST00000377348 YEATS4O95619 227 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 PLA2G4BP0C869 781 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 PHKA2P46019 1235 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 SLC12A3P55017 1021 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 PTENP60484 403 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 RAD51AP2Q09MP3 1159 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 DHX8Q14562 1220 aaKnown RBP14.82□□□□□ -0.04
VPS28-202ENST00000377348 PPP2R2DQ66LE6 453 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 CATSPER4Q7RTX7 472 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 SRGAP1Q7Z6B7 1085 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 SYT2Q8N9I0 419 aaPredicted RBP14.82□□□□□ -0.04
VPS28-202ENST00000377348 RAD9AQ99638 391 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 INO80BQ9C086 356 aaPredicted RBP14.82□□□□□ -0.04
VPS28-202ENST00000377348 CCSER1Q9C0I3 900 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 SEMA6BQ9H3T3 888 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 ZNF576Q9H609 170 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 SLC28A3Q9HAS3 691 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 RGS18Q9NS28 235 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 BLOC1S4Q9NUP1 217 aa14.82□□□□□ -0.04
VPS28-202ENST00000377348 NPHP3-ACAD11A0A0J9YXS1 232 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 LRRIQ4A6NIV6 560 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 C9IYK1 514 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 SLC26A4O43511 780 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 HIP1RO75146 1068 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 PPP6R2O75170 966 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 ZSCAN20P17040 1043 aaPredicted RBP14.81□□□□□ -0.04
VPS28-202ENST00000377348 GATMP50440 423 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 HTRA4P83105 476 aaPredicted RBP14.81□□□□□ -0.04
VPS28-202ENST00000377348 MAPK7Q13164 816 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 TFDP1Q14186 410 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 C1orf186Q6ZWK4 172 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 DAW1Q8N136 415 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 CRIPAKQ8N1N5 446 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 YME1L1Q96TA2 773 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 CERS4Q9HA82 394 aa14.81□□□□□ -0.04
VPS28-202ENST00000377348 PIN4Q9Y237 131 aaKnown RBP14.81□□□□□ -0.04
VPS28-202ENST00000377348 TTC3P53804 2025 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 A0A087X0B3 334 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 SFI1A8K8P3 1242 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 INO80B-WBP1J3KQ70 363 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 NCLP19338 710 aaKnown RBP14.8□□□□□ -0.04
VPS28-202ENST00000377348 DDIT3P35638 169 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 SARSP49591 514 aaKnown RBP14.8□□□□□ -0.04
VPS28-202ENST00000377348 CACNB1Q02641 598 aaPredicted RBP14.8□□□□□ -0.04
VPS28-202ENST00000377348 TAP1Q03518 808 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 MBTD1Q05BQ5 628 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 MCM6Q14566 821 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 GRIN2CQ14957 1233 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 SLC24A5Q71RS6 500 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 NPAS4Q8IUM7 802 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 KCTD17Q8N5Z5 321 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 RAD54LQ92698 747 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 KIFAP3Q92845 792 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 KIFC3Q9BVG8 833 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 PANK2Q9BZ23 570 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 C1orf112Q9NSG2 853 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 INSL6Q9Y581 213 aa14.8□□□□□ -0.04
VPS28-202ENST00000377348 TMEM265A0A087WTH1 108 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 LINC01553A4QN01 128 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 HOXA11P31270 313 aaPredicted RBP14.79□□□□□ -0.04
VPS28-202ENST00000377348 TXLNAP40222 546 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 ME1P48163 572 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 FAM189BP81408 668 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms