RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 CDHR1Q96JP9 859 aa14.63□□□□□ -0.07
COL4A1-201ENST00000375820 TDRD3Q9H7E2 651 aaKnown RBP14.63□□□□□ -0.07
COL4A1-201ENST00000375820 GPC3P51654 580 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 PMS1P54277 932 aaKnown RBP14.62□□□□□ -0.07
COL4A1-201ENST00000375820 PSMC1P62191 440 aaKnown RBP14.62□□□□□ -0.07
COL4A1-201ENST00000375820 ST13P4Q8IZP2 240 aaPredicted RBP14.62□□□□□ -0.07
COL4A1-201ENST00000375820 RMDN3Q96TC7 470 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 HPCAL4Q9UM19 191 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 USP17L10C9JJH3 530 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 PAPOLAP51003 745 aaKnown RBP14.62□□□□□ -0.07
COL4A1-201ENST00000375820 SLC26A7Q8TE54 656 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 SPON2Q9BUD6 331 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 MRFAP1Q9Y605 127 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.62□□□□□ -0.07
COL4A1-201ENST00000375820 ZHX2Q9Y6X8 837 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 POTEB3A0JP26 581 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 POTECB2RU33 542 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 ARL4CP56559 192 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 DMTNQ08495 405 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 POTEBQ6S5H4 581 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 YIPF3Q9GZM5 350 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 PP2D1A8MPX8 630 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 ATXN3P54252 364 aaPredicted RBP14.62□□□□□ -0.07
COL4A1-201ENST00000375820 PSMC5P62195 406 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 ACTN3Q08043 901 aaPredicted RBP14.62□□□□□ -0.07
COL4A1-201ENST00000375820 DALRD3Q5D0E6 543 aaKnown RBP14.62□□□□□ -0.07
COL4A1-201ENST00000375820 ATP6V0A4Q9HBG4 840 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 PTK2BQ14289 1009 aa14.62□□□□□ -0.07
COL4A1-201ENST00000375820 SKIV2LQ15477 1246 aaKnown RBP14.62□□□□□ -0.07
COL4A1-201ENST00000375820 GPS1Q13098 491 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 ZBTB17Q13105 803 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 SYNE4Q8N205 404 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 KDM5AP29375 1690 aaKnown RBP14.61□□□□□ -0.07
COL4A1-201ENST00000375820 SERPIND1P05546 499 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 MCAMP43121 646 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 SH3BGRP55822 239 aaPredicted RBP14.61□□□□□ -0.07
COL4A1-201ENST00000375820 THEMIS2Q5TEJ8 643 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 CIAPIN1Q6FI81 312 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 ACAD11Q709F0 780 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 CYB5R4Q7L1T6 521 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 CENPKQ9BS16 269 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 SLC7A5P2Q9GIP4 190 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 PTPRTO14522 1441 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 POTEFA5A3E0 1075 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 DPYSL4O14531 572 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 POTEIP0CG38 1075 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 MDM2Q00987 491 aaPredicted RBP14.61□□□□□ -0.07
COL4A1-201ENST00000375820 COBLL1Q53SF7 1204 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 SNRNP48Q6IEG0 339 aaKnown RBP14.61□□□□□ -0.07
COL4A1-201ENST00000375820 SWSAP1Q6NVH7 229 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 POTEGQ6S5H5 508 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 POTEEQ6S8J3 1075 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 C1orf54Q8WWF1 131 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 GOLPH3LQ9H4A5 285 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 ATP9BO43861 1147 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 NR3C1P04150 777 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 HSPA8P11142 646 aaKnown RBP14.61□□□□□ -0.07
COL4A1-201ENST00000375820 GRAMD4Q6IC98 578 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 ANKMY2Q8IV38 441 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 BTBD6Q96KE9 485 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 GOLGA8RI6L899 631 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 KRT37O76014 449 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 IL6STP40189 918 aaPredicted RBP14.61□□□□□ -0.07
COL4A1-201ENST00000375820 ALS2CLQ60I27 953 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 TBC1D10CQ8IV04 446 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 WDR75Q8IWA0 830 aaKnown RBP14.61□□□□□ -0.07
COL4A1-201ENST00000375820 ZBED8Q8IZ13 594 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 TEKT4Q8WW24 435 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 PBXIP1Q96AQ6 731 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 FAM161BQ96MY7 647 aa14.61□□□□□ -0.07
COL4A1-201ENST00000375820 HUS1O60921 280 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 PRCPP42785 496 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 PADI6Q6TGC4 694 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 ELMOD1Q8N336 334 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 YIPF2Q9BWQ6 316 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 SP110Q9HB58 689 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 FAM217BQ9NTX9 383 aaPredicted RBP14.6□□□□□ -0.07
COL4A1-201ENST00000375820 NPHP3-ACAD11A0A0J9YXS1 232 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 PPARGP37231 505 aaPredicted RBP14.6□□□□□ -0.07
COL4A1-201ENST00000375820 HLFQ16534 295 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 FASTKD5Q7L8L6 764 aaKnown RBP14.6□□□□□ -0.07
COL4A1-201ENST00000375820 PANX2Q96RD6 677 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 RNF103-CHMP3A0A140T963 221 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 BLMP54132 1417 aaPredicted RBP14.6□□□□□ -0.07
COL4A1-201ENST00000375820 A0A087WUV0 522 aaPredicted RBP14.6□□□□□ -0.07
COL4A1-201ENST00000375820 HNRNPH2P55795 449 aaKnown RBP14.6□□□□□ -0.07
COL4A1-201ENST00000375820 PTPN12Q05209 780 aaKnown RBP14.6□□□□□ -0.07
COL4A1-201ENST00000375820 PDIA2Q13087 525 aaKnown RBP14.6□□□□□ -0.07
COL4A1-201ENST00000375820 SLC10A5Q5PT55 438 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 ANKRD40Q6AI12 368 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 B4GALNT2Q8NHY0 566 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 ASIC4Q96FT7 647 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 WRNIP1Q96S55 665 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 CRKP46108 304 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 MORF4L2Q15014 288 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 ZNF564Q8TBZ8 553 aaPredicted RBP14.6□□□□□ -0.07
COL4A1-201ENST00000375820 NAF1Q96HR8 494 aaKnown RBP14.6□□□□□ -0.07
COL4A1-201ENST00000375820 SH2D3AQ9BRG2 576 aa14.6□□□□□ -0.07
COL4A1-201ENST00000375820 DHX36Q9H2U1 1008 aaKnown RBP14.6□□□□□ -0.07
COL4A1-201ENST00000375820 PIDD1Q9HB75 910 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms