RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 KSR1Q8IVT5 923 aa24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 POF1BQ8WVV4 589 aa24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 C8orf76Q96K31 380 aa24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 MTMR9Q96QG7 549 aa24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 CWH43Q9H720 699 aa24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 TTC12Q9H892 705 aaPredicted RBP24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 SH2B1Q9NRF2 756 aaPredicted RBP24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 HCSTQ9UBK5 93 aa24.27■■□□□ 1.48
CCDC28B-201ENST00000373602 PUS10Q3MIT2 529 aaKnown RBP24.26■■□□□ 1.47
CCDC28B-201ENST00000373602 TPH2Q8IWU9 490 aa24.26■■□□□ 1.47
CCDC28B-201ENST00000373602 NLRP4Q96MN2 994 aa24.26■■□□□ 1.47
CCDC28B-201ENST00000373602 HSD17B14Q9BPX1 270 aa24.26■■□□□ 1.47
CCDC28B-201ENST00000373602 EIF2AK1Q9BQI3 630 aaKnown RBP24.26■■□□□ 1.47
CCDC28B-201ENST00000373602 IFT122Q9HBG6 1241 aa24.26■■□□□ 1.47
CCDC28B-201ENST00000373602 CLDND1Q9NY35 253 aa24.26■■□□□ 1.47
CCDC28B-201ENST00000373602 COL4A3BPQ9Y5P4 624 aa24.26■■□□□ 1.47
CCDC28B-201ENST00000373602 H3BQ06 376 aaPredicted RBP24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 ZBTB39O15060 712 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 CSPG5O95196 566 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 LYPLA2O95372 231 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 EOMESO95936 686 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 IRS1P35568 1242 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 LTBRP36941 435 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 TXKP42681 527 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 RBM25P49756 843 aaKnown RBP24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 HMGN5P82970 282 aaKnown RBP24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 UBE3AQ05086 875 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 CSPP1Q1MSJ5 1256 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 XKR9Q5GH70 373 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 PTCRAQ6ISU1 281 aaPredicted RBP24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 COLGALT1Q8NBJ5 622 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 TMEM143Q96AN5 459 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 TRAIPQ9BWF2 469 aa24.25■■□□□ 1.47
CCDC28B-201ENST00000373602 GRXCR2A6NFK2 248 aa24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 GAS2O43903 313 aaKnown RBP24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 ATF7P17544 494 aaPredicted RBP24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 LAG3P18627 525 aa24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 EMC2Q15006 297 aa24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 CLLU1OSQ5K130 101 aa24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 LRRC55Q6ZSA7 311 aa24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 EP400NLQ6ZTU2 488 aa24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 ABI1Q8IZP0 508 aa24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 LRRC43Q8N309 656 aa24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 RNF169Q8NCN4 708 aa24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 FBXO18Q8NFZ0 1043 aa24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 PRPF31Q8WWY3 499 aaKnown RBP24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 PSPC1Q8WXF1 523 aaKnown RBP24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 PPP2R3CQ969Q6 453 aa24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 TMEM60Q9H2L4 133 aa24.24■■□□□ 1.47
CCDC28B-201ENST00000373602 FGF18O76093 207 aa24.23■■□□□ 1.47
CCDC28B-201ENST00000373602 IL9P15248 144 aa24.23■■□□□ 1.47
CCDC28B-201ENST00000373602 ATP2B1P20020 1258 aa24.23■■□□□ 1.47
CCDC28B-201ENST00000373602 GTF2F1P35269 517 aaKnown RBP eCLIP24.23■■□□□ 1.47
CCDC28B-201ENST00000373602 CATSPER4Q7RTX7 472 aa24.23■■□□□ 1.47
CCDC28B-201ENST00000373602 THNSL1Q8IYQ7 743 aa24.23■■□□□ 1.47
CCDC28B-201ENST00000373602 TCP11Q8WWU5 503 aa24.23■■□□□ 1.47
CCDC28B-201ENST00000373602 FOXP1Q9H334 677 aaPredicted RBP24.23■■□□□ 1.47
CCDC28B-201ENST00000373602 BMP2KQ9NSY1 1161 aaPredicted RBP24.23■■□□□ 1.47
CCDC28B-201ENST00000373602 PIN4Q9Y237 131 aaKnown RBP24.23■■□□□ 1.47
CCDC28B-201ENST00000373602 PLXNA4Q9HCM2 1894 aa24.23■■□□□ 1.47
CCDC28B-201ENST00000373602 ASAP2O43150 1006 aa24.22■■□□□ 1.47
CCDC28B-201ENST00000373602 MCM7P33993 719 aa24.22■■□□□ 1.47
CCDC28B-201ENST00000373602 PHKA2P46019 1235 aa24.22■■□□□ 1.47
CCDC28B-201ENST00000373602 LAMTOR4Q0VGL1 99 aa24.22■■□□□ 1.47
CCDC28B-201ENST00000373602 TWF2Q6IBS0 349 aaKnown RBP24.22■■□□□ 1.47
CCDC28B-201ENST00000373602 SRGAP1Q7Z6B7 1085 aa24.22■■□□□ 1.47
CCDC28B-201ENST00000373602 FERMT3Q86UX7 667 aa24.22■■□□□ 1.47
CCDC28B-201ENST00000373602 MTRQ99707 1265 aa24.22■■□□□ 1.47
CCDC28B-201ENST00000373602 IGFLR1Q9H665 355 aa24.22■■□□□ 1.47
CCDC28B-201ENST00000373602 ANKEF1Q9NU02 776 aa24.22■■□□□ 1.47
CCDC28B-201ENST00000373602 MUC3AQ02505 3323 aa24.22■■□□□ 1.47
CCDC28B-201ENST00000373602 SRGAP2CP0DJJ0 459 aa24.21■■□□□ 1.47
CCDC28B-201ENST00000373602 PLCB3Q01970 1234 aa24.21■■□□□ 1.47
CCDC28B-201ENST00000373602 DLX2Q07687 328 aaPredicted RBP24.21■■□□□ 1.47
CCDC28B-201ENST00000373602 ADAM15Q13444 863 aa24.21■■□□□ 1.47
CCDC28B-201ENST00000373602 ADGRD2Q7Z7M1 963 aa24.21■■□□□ 1.47
CCDC28B-201ENST00000373602 FAM178BQ8IXR5 827 aa24.21■■□□□ 1.47
CCDC28B-201ENST00000373602 FAM184AQ8NB25 1140 aa24.21■■□□□ 1.47
CCDC28B-201ENST00000373602 HELQQ8TDG4 1101 aa24.21■■□□□ 1.47
CCDC28B-201ENST00000373602 XPNPEP1Q9NQW7 623 aa24.21■■□□□ 1.47
CCDC28B-201ENST00000373602 ARID2Q68CP9 1835 aa24.21■■□□□ 1.47
CCDC28B-201ENST00000373602 POTEMA6NI47 508 aa24.2■■□□□ 1.46
CCDC28B-201ENST00000373602 ZNF623O75123 536 aa24.2■■□□□ 1.46
CCDC28B-201ENST00000373602 SKIP12755 728 aa24.2■■□□□ 1.46
CCDC28B-201ENST00000373602 ORC2Q13416 577 aaPredicted RBP24.2■■□□□ 1.46
CCDC28B-201ENST00000373602 RABEP1Q15276 862 aa24.2■■□□□ 1.46
CCDC28B-201ENST00000373602 KCNT2Q6UVM3 1135 aa24.2■■□□□ 1.46
CCDC28B-201ENST00000373602 MINDY3Q9H8M7 445 aa24.2■■□□□ 1.46
CCDC28B-201ENST00000373602 TLR9Q9NR96 1032 aa24.2■■□□□ 1.46
CCDC28B-201ENST00000373602 AGPAT5Q9NUQ2 364 aa24.2■■□□□ 1.46
CCDC28B-201ENST00000373602 FAM105AQ9NUU6 356 aa24.2■■□□□ 1.46
CCDC28B-201ENST00000373602 LZTS1Q9Y250 596 aa24.2■■□□□ 1.46
CCDC28B-201ENST00000373602 LINC01565O15544 149 aa24.19■■□□□ 1.46
CCDC28B-201ENST00000373602 TBX10O75333 385 aa24.19■■□□□ 1.46
CCDC28B-201ENST00000373602 RAB27AP51159 221 aa24.19■■□□□ 1.46
CCDC28B-201ENST00000373602 EFHBQ8N7U6 833 aa24.19■■□□□ 1.46
CCDC28B-201ENST00000373602 RNF149Q8NC42 400 aa24.19■■□□□ 1.46
CCDC28B-201ENST00000373602 RSPH1Q8WYR4 309 aa24.19■■□□□ 1.46
CCDC28B-201ENST00000373602 MRPS27Q92552 414 aaKnown RBP24.19■■□□□ 1.46
CCDC28B-201ENST00000373602 ZNF558Q96NG5 402 aa24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms