RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 BEST2Q8NFU1 509 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 MRPL4Q9BYD3 311 aaKnown RBP12.45□□□□□ -0.42
SYNE1-204ENST00000367248 NGRNQ9NPE2 291 aaKnown RBP12.45□□□□□ -0.42
SYNE1-204ENST00000367248 EIF3CLB5ME19 914 aaKnown RBP12.45□□□□□ -0.42
SYNE1-204ENST00000367248 HIP1RO75146 1068 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 ADORA2BP29275 332 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 YWHAGP61981 247 aaKnown RBP eCLIP12.45□□□□□ -0.42
SYNE1-204ENST00000367248 TROAPQ12815 778 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 ZNF699Q32M78 642 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 KRT39Q6A163 491 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 RHOT2Q8IXI1 618 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 MGARPQ8TDB4 240 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 EIF3CQ99613 913 aaKnown RBP12.45□□□□□ -0.42
SYNE1-204ENST00000367248 CACYBPQ9HB71 228 aaKnown RBP12.45□□□□□ -0.42
SYNE1-204ENST00000367248 PRPSAP1Q14558 356 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 PAN2Q504Q3 1202 aaKnown RBP12.45□□□□□ -0.42
SYNE1-204ENST00000367248 MUM1L1Q5H9M0 696 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 TRIM17Q9Y577 477 aa12.45□□□□□ -0.42
SYNE1-204ENST00000367248 SGK1O00141 431 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 GLT1D1Q96MS3 346 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 TRIM9Q9C026 710 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 FAM8A1Q9UBU6 413 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 GOLGA8CPA6NN73 597 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 PFDN6O15212 129 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 PPFIA4O75335 1185 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 ADCY1Q08828 1119 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 CHST13Q8NET6 341 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 PPP4R1Q8TF05 950 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 SAAL1Q96ER3 474 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 ZDHHC15Q96MV8 337 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 TTC25Q96NG3 672 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 HOMER3Q9NSC5 361 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 ADAM22Q9P0K1 906 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 ARHGAP23Q9P227 1491 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 FOXN1O15353 648 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 TADA2AO75478 443 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 FDPSP14324 419 aaKnown RBP12.44□□□□□ -0.42
SYNE1-204ENST00000367248 GTF2A2P52657 109 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 SGO2Q562F6 1265 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 ANKRD42Q8N9B4 389 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 PRPF31Q8WWY3 499 aaKnown RBP12.44□□□□□ -0.42
SYNE1-204ENST00000367248 DAAM1Q9Y4D1 1078 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 COL5A2P05997 1499 aaPredicted RBP12.44□□□□□ -0.42
SYNE1-204ENST00000367248 PXDNQ92626 1479 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 HSPH1Q92598 858 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 ZWILCHQ9H900 591 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 VWDEQ8N2E2 1590 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 STXBP3O00186 592 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 HEXIM1O94992 359 aaKnown RBP12.44□□□□□ -0.42
SYNE1-204ENST00000367248 PGK2P07205 417 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 CAP2P40123 477 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 ADM5C9JUS6 153 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 GPC3P51654 580 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 PPP6R3Q5H9R7 873 aaPredicted RBP12.44□□□□□ -0.42
SYNE1-204ENST00000367248 DEFB128Q7Z7B8 93 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 RNF180Q86T96 592 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 TMEM143Q96AN5 459 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 KIF12Q96FN5 646 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 FAM114A2Q9NRY5 505 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 PCDHA13Q9Y5I0 950 aa12.44□□□□□ -0.42
SYNE1-204ENST00000367248 CNTNAP5Q8WYK1 1306 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 STX2P32856 288 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 LMBRD2Q68DH5 695 aaPredicted RBP12.43□□□□□ -0.42
SYNE1-204ENST00000367248 JRKLQ9Y4A0 524 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 F5H423 210 aaPredicted RBP12.43□□□□□ -0.42
SYNE1-204ENST00000367248 POLRMTO00411 1230 aaKnown RBP12.43□□□□□ -0.42
SYNE1-204ENST00000367248 MOCS3O95396 460 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 YWHABP31946 246 aaKnown RBP12.43□□□□□ -0.42
SYNE1-204ENST00000367248 KCNB1Q14721 858 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 TMEM270Q6UE05 265 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 VSIG1Q86XK7 387 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 RABGGTAQ92696 567 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 CDKL2Q92772 493 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 RIT2Q99578 217 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 PIK3R2O00459 728 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 PDXKO00764 312 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 ECEL1O95672 775 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 TMTC4Q5T4D3 741 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 NBPF12Q5TAG4 269 aaPredicted RBP12.43□□□□□ -0.42
SYNE1-204ENST00000367248 C3orf67Q6ZVT6 689 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 AGBL1Q96MI9 1066 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 ZMYND12Q9H0C1 365 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 TNS2Q63HR2 1409 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 MCF2LO15068 1137 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 VAMP7P51809 220 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 XRRA1Q6P2D8 792 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 ZNF449Q6P9G9 518 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 KCTD6Q8NC69 237 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 BCL2L12Q9HB09 334 aa12.43□□□□□ -0.42
SYNE1-204ENST00000367248 FAM217BQ9NTX9 383 aaPredicted RBP12.43□□□□□ -0.42
SYNE1-204ENST00000367248 RPS6KA2Q15349 733 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 NXNQ6DKJ4 435 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 OPTNQ96CV9 577 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 LRRC53A6NM62 1247 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 GH1P01241 217 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 TRIM49P0CI25 452 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 TRIM49CP0CI26 452 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 NMT1P30419 496 aaKnown RBP12.42□□□□□ -0.42
SYNE1-204ENST00000367248 SLC12A1Q13621 1099 aa12.42□□□□□ -0.42
SYNE1-204ENST00000367248 DCAF4L1Q3SXM0 396 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms