RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 COG4Q9H9E3 785 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 TTC37Q6PGP7 1564 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 KIF28PB7ZC32 967 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 CCDC157Q569K6 752 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 RNF135Q8IUD6 432 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 FBXL13Q8NEE6 735 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 BCAS4Q8TDM0 211 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 FAM84BQ96KN1 310 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-201ENST00000359947 C2orf40Q9H1Z8 148 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 ASNSD1Q9NWL6 643 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 TTC7AQ9ULT0 858 aaPredicted RBP16.65■□□□□ 0.26
PTPRF-201ENST00000359947 SCINQ9Y6U3 715 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 RARBP10826 455 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 DR1Q01658 176 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 THEMIS2Q5TEJ8 643 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 BTBD8Q5XKL5 378 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 EPS15L1Q9UBC2 864 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 STRIP2Q9ULQ0 834 aa16.65■□□□□ 0.26
PTPRF-201ENST00000359947 RSBN1LQ6PCB5 846 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 LCA5Q86VQ0 697 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 RAD54LQ92698 747 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 THOC1Q96FV9 657 aaKnown RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 JPH1Q9HDC5 661 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 NDFIP2Q9NV92 336 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 GNA15P30679 374 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 ALKBH5Q6P6C2 394 aaKnown RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 STAG2Q8N3U4 1231 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 EIF2AK1Q9BQI3 630 aaKnown RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 RBAKQ9NYW8 714 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 PSMC1P62191 440 aaKnown RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 CLEC10AQ8IUN9 316 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 MRFAP1L1Q96HT8 127 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 KLC2Q9H0B6 622 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 UBA6A0AVT1 1052 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 VAMP7P51809 220 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 PSMC5P62195 406 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 SPATA2LQ8IUW3 424 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 ZC3H4Q9UPT8 1303 aaKnown RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 PTCH1Q13635 1447 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 PP2D1A8MPX8 630 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 PSMD14O00487 310 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 TDP2O95551 362 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 ASMTLO95671 621 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 SFNP31947 248 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 RWDD2BP57060 319 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 POU5F1BQ06416 359 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 COASYQ13057 564 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 CAPRIN1Q14444 709 aaKnown RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 TMEM35BQ8NCS4 154 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 TBC1D16Q8TBP0 767 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 RNF25Q96BH1 459 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 RRAGDQ9NQL2 400 aaPredicted RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 GOLGA8QA0A0J9YX86 632 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 GOLGA8OA6NCC3 632 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 GOLGA8NF8WBI6 632 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 C2CD2LO14523 706 aa16.64■□□□□ 0.25
PTPRF-201ENST00000359947 SEC31AO94979 1220 aaKnown RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 TRMT10CQ7L0Y3 403 aaKnown RBP16.64■□□□□ 0.25
PTPRF-201ENST00000359947 PRRG1O14668 218 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 IMPG1Q17R60 797 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 PPP4R3CPQ6ZMV5 832 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 SAMD7Q7Z3H4 446 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 ACAP3Q96P50 834 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 INTUQ9ULD6 942 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 VCPP55072 806 aaKnown RBP16.63■□□□□ 0.25
PTPRF-201ENST00000359947 COG2Q14746 738 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 KRT31Q15323 416 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 TMEM143Q96AN5 459 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 VPS39Q96JC1 886 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 CCL15-CCL14A0A0B4J2E2 113 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 CFAP69A5D8W1 941 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 STAT5BP51692 787 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 TBCCQ15814 346 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 CCL15Q16663 113 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 ARL6IP4Q66PJ3 421 aaKnown RBP16.63■□□□□ 0.25
PTPRF-201ENST00000359947 UNC13DQ70J99 1090 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 PDIK1LQ8N165 341 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 CXorf38Q8TB03 319 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 TJP2Q9UDY2 1190 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 PYCARDQ9ULZ3 195 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 CLASP1Q7Z460 1538 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 NPHP3-ACAD11A0A0J9YXS1 232 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 A0A1B0GUA9 196 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 FGGP02679 453 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 MB21D1Q8N884 522 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 RMDN1Q96DB5 314 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 BCL2L12Q9HB09 334 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 DONSONQ9NYP3 566 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 HIP1RO75146 1068 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 PPP2R3CQ969Q6 453 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 GBP5Q96PP8 586 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 TNS3Q68CZ2 1445 aa16.63■□□□□ 0.25
PTPRF-201ENST00000359947 SDC4P31431 198 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 CENPUQ71F23 418 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 EGFL8Q99944 293 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 CLCA2Q9UQC9 943 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 ARHGEF5Q12774 1597 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 NCLNQ969V3 563 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 OSBPL3Q9H4L5 887 aa16.62■□□□□ 0.25
PTPRF-201ENST00000359947 DHX35Q9H5Z1 703 aaKnown RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms