RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TMEM174Q8WUU8 243 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 JDP2Q8WYK2 163 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 PBKQ96KB5 322 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 KRT12Q99456 494 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 PCIF1Q9H4Z3 704 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 GOLGA6BA6NDN3 693 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 ZBTB48P10074 688 aaPredicted RBP22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 VCAM1P19320 739 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 LMNB1P20700 586 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 YWHABP31946 246 aaKnown RBP22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 HNRNPH2P55795 449 aaKnown RBP22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 DLG4P78352 724 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 TNFAIP1Q13829 316 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 PHLDB3Q6NSJ2 640 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 CAVIN3Q969G5 261 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 ACCSQ96QU6 501 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 SH2D3AQ9BRG2 576 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 GINM1Q9NU53 330 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 UGCGQ16739 394 aa22.64■■□□□ 1.22
CCDC88B-203ENST00000359902 LMBR1Q8WVP7 490 aa22.64■■□□□ 1.22
CCDC88B-203ENST00000359902 STXBP5LQ9Y2K9 1186 aa22.64■■□□□ 1.22
CCDC88B-203ENST00000359902 ASTN2O75129 1339 aaPredicted RBP22.64■■□□□ 1.21
CCDC88B-203ENST00000359902 TMEM150BA6NC51 233 aa22.64■■□□□ 1.21
CCDC88B-203ENST00000359902 ATP9AO75110 1047 aa22.64■■□□□ 1.21
CCDC88B-203ENST00000359902 HEXIM1O94992 359 aaKnown RBP22.64■■□□□ 1.21
CCDC88B-203ENST00000359902 KRT13P13646 458 aa22.64■■□□□ 1.21
CCDC88B-203ENST00000359902 NPEPPSP55786 919 aa22.64■■□□□ 1.21
CCDC88B-203ENST00000359902 MTMR2Q13614 643 aa22.64■■□□□ 1.21
CCDC88B-203ENST00000359902 C12orf56Q8IXR9 622 aa22.64■■□□□ 1.21
CCDC88B-203ENST00000359902 EPB41L5Q9HCM4 733 aa22.64■■□□□ 1.21
CCDC88B-203ENST00000359902 DAAM1Q9Y4D1 1078 aa22.64■■□□□ 1.21
CCDC88B-203ENST00000359902 MYCLP12524 364 aaPredicted RBP22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 CARSP49589 748 aaKnown RBP22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 PTPROQ16827 1216 aa22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 INTS8Q75QN2 995 aaKnown RBP22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 ACTRT1Q8TDG2 376 aa22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 SLC16A10Q8TF71 515 aa22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 CBWD1Q9BRT8 395 aa22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 TAOK3Q9H2K8 898 aa22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 ZSCAN5CA6NGD5 496 aaPredicted RBP22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 GUCY2DQ02846 1103 aa22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 HAUS6Q7Z4H7 955 aa22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 C4orf19Q8IY42 314 aa22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 TRERF1Q96PN7 1200 aa22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 RMDN3Q96TC7 470 aa22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 RPAP3Q9H6T3 665 aaPredicted RBP22.63■■□□□ 1.21
CCDC88B-203ENST00000359902 EMSYQ7Z589 1322 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 CCDC172P0C7W6 258 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 VAMP7P51809 220 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 GTF2BQ00403 316 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 ARHGAP44Q17R89 818 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 PEX26Q7Z412 305 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 DEFB132Q7Z7B7 95 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 FMNL3Q8IVF7 1028 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 METTL13Q8N6R0 699 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 TSEN2Q8NCE0 465 aaKnown RBP22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 SCFD2Q8WU76 684 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 PDCD2LQ9BRP1 358 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 ST6GALNAC4Q9H4F1 302 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 PLEKHA4Q9H4M7 779 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 PXMP2Q9NR77 195 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 CALCOCO1Q9P1Z2 691 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 SUCLA2Q9P2R7 463 aaPredicted RBP22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 FOXN3O00409 490 aaPredicted RBP22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 BACH1O14867 736 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 CEP104O60308 925 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 ZBED4O75132 1171 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 CCNE2O96020 404 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 CAPN2P17655 700 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 TNNC1P63316 161 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 PPP3CAQ08209 521 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 TAF3Q5VWG9 929 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 RNF207Q6ZRF8 634 aa22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 CTDP1Q9Y5B0 961 aaPredicted RBP22.62■■□□□ 1.21
CCDC88B-203ENST00000359902 ESYT3A0FGR9 886 aa22.61■■□□□ 1.21
CCDC88B-203ENST00000359902 NNTQ13423 1086 aa22.61■■□□□ 1.21
CCDC88B-203ENST00000359902 KIF22Q14807 665 aa22.61■■□□□ 1.21
CCDC88B-203ENST00000359902 C1orf220Q5T0J3 134 aa22.61■■□□□ 1.21
CCDC88B-203ENST00000359902 NT5DC3Q86UY8 548 aa22.61■■□□□ 1.21
CCDC88B-203ENST00000359902 SYCE1Q8N0S2 351 aa22.61■■□□□ 1.21
CCDC88B-203ENST00000359902 AFAP1L1Q8TED9 768 aa22.61■■□□□ 1.21
CCDC88B-203ENST00000359902 GPRC5CQ9NQ84 441 aa22.61■■□□□ 1.21
CCDC88B-203ENST00000359902 NFU1Q9UMS0 254 aa22.61■■□□□ 1.21
CCDC88B-203ENST00000359902 TMCO5BA8MYB1 307 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 VWA5AO00534 786 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 TMEM253P0C7T8 217 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 RFX1P22670 979 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 ACTN2P35609 894 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 PSMC5P62195 406 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 DAAM2Q86T65 1068 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 XXYLT1Q8NBI6 393 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 ZSWIM2Q8NEG5 633 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 SLC35G2Q8TBE7 412 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 CCDC43Q96MW1 224 aaKnown RBP22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 TIPINQ9BVW5 301 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 HSPBP1Q9NZL4 362 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 NCANO14594 1321 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 RAD51CO43502 376 aa22.6■■□□□ 1.21
CCDC88B-203ENST00000359902 JAK3P52333 1124 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms