RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 LPIN1Q14693 890 aa24.54■■□□□ 1.52
SHMT1-203ENST00000354098 FBXO47Q5MNV8 452 aa24.54■■□□□ 1.52
SHMT1-203ENST00000354098 CEP57L1Q8IYX8 460 aa24.54■■□□□ 1.52
SHMT1-203ENST00000354098 KIFAP3Q92845 792 aa24.54■■□□□ 1.52
SHMT1-203ENST00000354098 LBHD1Q9BQE6 289 aaPredicted RBP24.54■■□□□ 1.52
SHMT1-203ENST00000354098 IFT122Q9HBG6 1241 aa24.54■■□□□ 1.52
SHMT1-203ENST00000354098 ACRP10323 421 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 CASP1P29466 404 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 MAGEA10P43363 369 aaPredicted RBP24.53■■□□□ 1.52
SHMT1-203ENST00000354098 EPHB4P54760 987 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 UBE2HP62256 183 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 CDC42EP1Q00587 391 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 FPGSQ05932 587 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 TIPINQ9BVW5 301 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 AGO3Q9H9G7 860 aaKnown RBP24.53■■□□□ 1.52
SHMT1-203ENST00000354098 NR1I2O75469 434 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 FAM160A1Q05DH4 1040 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 C16orf59Q7L2K0 433 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 ZNF410Q86VK4 478 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 DNAJC19Q96DA6 116 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 PAGE5Q96GU1 130 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 DRC1Q96MC2 740 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 LMBRD1Q9NUN5 540 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 USP25Q9UHP3 1055 aa24.53■■□□□ 1.52
SHMT1-203ENST00000354098 NOC2LQ9Y3T9 749 aaKnown RBP24.53■■□□□ 1.52
SHMT1-203ENST00000354098 CXCL10P02778 98 aa24.52■■□□□ 1.52
SHMT1-203ENST00000354098 EIF4BP23588 611 aaKnown RBP24.52■■□□□ 1.52
SHMT1-203ENST00000354098 KRBA2Q6ZNG9 492 aa24.52■■□□□ 1.52
SHMT1-203ENST00000354098 ZNF710Q8N1W2 664 aa24.52■■□□□ 1.52
SHMT1-203ENST00000354098 BLZF1Q9H2G9 400 aa24.52■■□□□ 1.52
SHMT1-203ENST00000354098 MINDY3Q9H8M7 445 aa24.52■■□□□ 1.52
SHMT1-203ENST00000354098 MAGEF1Q9HAY2 307 aa24.52■■□□□ 1.52
SHMT1-203ENST00000354098 ODF2LQ9ULJ1 636 aa24.52■■□□□ 1.52
SHMT1-203ENST00000354098 LRRIQ4A6NIV6 560 aa24.51■■□□□ 1.51
SHMT1-203ENST00000354098 PARNO95453 639 aaKnown RBP24.51■■□□□ 1.51
SHMT1-203ENST00000354098 DARSP14868 501 aaKnown RBP24.51■■□□□ 1.51
SHMT1-203ENST00000354098 FGFR4P22455 802 aa24.51■■□□□ 1.51
SHMT1-203ENST00000354098 RFC2P35250 354 aa24.51■■□□□ 1.51
SHMT1-203ENST00000354098 PEX3P56589 373 aa24.51■■□□□ 1.51
SHMT1-203ENST00000354098 TCTN1Q2MV58 587 aa24.51■■□□□ 1.51
SHMT1-203ENST00000354098 CNNM3Q8NE01 707 aa24.51■■□□□ 1.51
SHMT1-203ENST00000354098 KIFC3Q9BVG8 833 aa24.51■■□□□ 1.51
SHMT1-203ENST00000354098 GCOM2Q9BZD3 368 aaPredicted RBP24.51■■□□□ 1.51
SHMT1-203ENST00000354098 TRIM9Q9C026 710 aa24.51■■□□□ 1.51
SHMT1-203ENST00000354098 ZHX3Q9H4I2 956 aa24.51■■□□□ 1.51
SHMT1-203ENST00000354098 CEP290O15078 2479 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 CD52P31358 61 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 AMPD3Q01432 767 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 PPIGQ13427 754 aaKnown RBP eCLIP24.5■■□□□ 1.512e-6■□□□□ 10.7
SHMT1-203ENST00000354098 TFDP1Q14186 410 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 TSHZ1Q6ZSZ6 1077 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 IFT74Q96LB3 600 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 IL23AQ9NPF7 189 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 PDE4DIPQ5VU43 2346 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 FAM13AO94988 1023 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 PLS3P13797 630 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 NAMPTP43490 491 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 NPTX2P47972 431 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 ZNF131P52739 623 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 PTENP60484 403 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 CUL4BQ13620 913 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 PLEKHG4Q58EX7 1191 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 FAM228AQ86W67 206 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 DBF4BQ8NFT6 615 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 C7orf25Q9BPX7 421 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 LRRC27Q9C0I9 530 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 PADI3Q9ULW8 664 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 SQORQ9Y6N5 450 aa24.5■■□□□ 1.51
SHMT1-203ENST00000354098 ADGRA3Q8IWK6 1321 aa24.49■■□□□ 1.51
SHMT1-203ENST00000354098 CCDC169A6NNP5 214 aa24.49■■□□□ 1.51
SHMT1-203ENST00000354098 TBCAO75347 108 aaKnown RBP24.49■■□□□ 1.51
SHMT1-203ENST00000354098 RPS6KA5O75582 802 aa24.49■■□□□ 1.51
SHMT1-203ENST00000354098 POU5F1BQ06416 359 aa24.49■■□□□ 1.51
SHMT1-203ENST00000354098 RPUSD2Q8IZ73 545 aaKnown RBP24.49■■□□□ 1.51
SHMT1-203ENST00000354098 MYCT1Q8N699 235 aa24.49■■□□□ 1.51
SHMT1-203ENST00000354098 IFIH1Q9BYX4 1025 aaKnown RBP24.49■■□□□ 1.51
SHMT1-203ENST00000354098 PARVGQ9HBI0 331 aa24.49■■□□□ 1.51
SHMT1-203ENST00000354098 IDEP14735 1019 aa24.48■■□□□ 1.51
SHMT1-203ENST00000354098 PHKA2P46019 1235 aa24.48■■□□□ 1.51
SHMT1-203ENST00000354098 NFX1Q12986 1120 aaKnown RBP24.48■■□□□ 1.51
SHMT1-203ENST00000354098 PPP2R5AQ15172 486 aa24.48■■□□□ 1.51
SHMT1-203ENST00000354098 USP38Q8NB14 1042 aa24.48■■□□□ 1.51
SHMT1-203ENST00000354098 TET1Q8NFU7 2136 aa24.48■■□□□ 1.51
SHMT1-203ENST00000354098 GDF15Q99988 308 aa24.48■■□□□ 1.51
SHMT1-203ENST00000354098 C17orf75Q9HAS0 396 aa24.48■■□□□ 1.51
SHMT1-203ENST00000354098 ST3GAL5Q9UNP4 418 aa24.48■■□□□ 1.51
SHMT1-203ENST00000354098 PRR29P0C7W0 189 aa24.47■■□□□ 1.51
SHMT1-203ENST00000354098 PAK2Q13177 524 aa24.47■■□□□ 1.51
SHMT1-203ENST00000354098 DMP1Q13316 513 aaPredicted RBP24.47■■□□□ 1.51
SHMT1-203ENST00000354098 ODR4Q5SWX8 454 aa24.47■■□□□ 1.51
SHMT1-203ENST00000354098 CDCA2Q69YH5 1023 aaPredicted RBP24.47■■□□□ 1.51
SHMT1-203ENST00000354098 ZNF365Q70YC5 407 aa24.47■■□□□ 1.51
SHMT1-203ENST00000354098 IFNLR1Q8IU57 520 aaPredicted RBP24.47■■□□□ 1.51
SHMT1-203ENST00000354098 DEPTORQ8TB45 409 aa24.47■■□□□ 1.51
SHMT1-203ENST00000354098 DACT1Q9NYF0 836 aa24.47■■□□□ 1.51
SHMT1-203ENST00000354098 SLC16A4O15374 487 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 ASIC1P78348 528 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 MBTD1Q05BQ5 628 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 CNNM4Q6P4Q7 775 aa24.46■■□□□ 1.51
SHMT1-203ENST00000354098 SRGAP1Q7Z6B7 1085 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms