RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 MAP3K21Q5TCX8 1036 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 UNC13DQ70J99 1090 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 HAUS6Q7Z4H7 955 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 TEX2Q8IWB9 1127 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 RETREG2Q8NC44 543 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 ARRDC4Q8NCT1 418 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 ELMO3Q96BJ8 720 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 SAAL1Q96ER3 474 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 CPB2Q96IY4 423 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 FAM167AQ96KS9 214 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 PCDHB13Q9Y5F0 798 aa10.15□□□□□ -0.78
USP4-202ENST00000351842 STBD1O95210 358 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 GLRA2P23416 452 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 TMOD1P28289 359 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 SMTNP53814 917 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 TCERG1LQ5VWI1 586 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 SH3RF1Q7Z6J0 888 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 PCSK9Q8NBP7 692 aaKnown RBP10.14□□□□□ -0.79
USP4-202ENST00000351842 RDM1Q8NG50 284 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 OSBPL7Q9BZF2 842 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 CBX8Q9HC52 389 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 SAMSN1Q9NSI8 373 aaKnown RBP10.14□□□□□ -0.79
USP4-202ENST00000351842 USP25Q9UHP3 1055 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 GHRP10912 638 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 ATP1A3P13637 1013 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 SPAG1Q07617 926 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 CNNM4Q6P4Q7 775 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 MTHFD1LQ6UB35 978 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 PLPPR4Q7Z2D5 763 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 DEFB128Q7Z7B8 93 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 MYOCDQ8IZQ8 938 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 ZSWIM2Q8NEG5 633 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 ZBTB45Q96K62 511 aaPredicted RBP10.14□□□□□ -0.79
USP4-202ENST00000351842 C7orf25Q9BPX7 421 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 TARS2Q9BW92 718 aaKnown RBP10.14□□□□□ -0.79
USP4-202ENST00000351842 MINDY3Q9H8M7 445 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 ANKEF1Q9NU02 776 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 NFE2L3Q9Y4A8 694 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 GRIN2DO15399 1336 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 FAM237AA0A1B0GTK4 181 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 K7ERI5 159 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 NLRP12P59046 1061 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 ZNF445P59923 1031 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 MAPK7Q13164 816 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 STIM1Q13586 685 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 CAPSQ13938 189 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 HYIQ5T013 277 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 MCPH1Q8NEM0 835 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 ZNF333Q96JL9 665 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 DRC1Q96MC2 740 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 GSDMAQ96QA5 445 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 CUEDC2Q9H467 287 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 FANCLQ9NW38 375 aa10.14□□□□□ -0.79
USP4-202ENST00000351842 EMSYQ7Z589 1322 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 IGKV6D-21A0A0A0MT36 114 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 PSMA7O14818 248 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 RRP9O43818 475 aaKnown RBP10.13□□□□□ -0.79
USP4-202ENST00000351842 LGR5O75473 907 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 C22orf31O95567 290 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 SYN1P17600 705 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 THNSL1Q8IYQ7 743 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 SCLYQ96I15 445 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 RMND1Q9NWS8 449 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 HES2Q9Y543 173 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 MARCH8Q5T0T0 291 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 ZNF658Q5TYW1 1059 aaPredicted RBP10.13□□□□□ -0.79
USP4-202ENST00000351842 LMBRD2Q68DH5 695 aaPredicted RBP10.13□□□□□ -0.79
USP4-202ENST00000351842 FAM117BQ6P1L5 589 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 SCFD1Q8WVM8 642 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 CCDC127Q96BQ5 260 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 PPP1R9BQ96SB3 815 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 KATNAL1Q9BW62 490 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 SRRTQ9BXP5 876 aaKnown RBP10.13□□□□□ -0.79
USP4-202ENST00000351842 LRRC27Q9C0I9 530 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 MYH11P35749 1972 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 UMODL1Q5DID0 1318 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 CHD7Q9P2D1 2997 aa10.13□□□□□ -0.79
USP4-202ENST00000351842 LOC102724159A0A0B4J2E5 919 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 B4GALT4O60513 344 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 MSCO60682 206 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 SGPL1O95470 568 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 PLS3P13797 630 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 PRMT2P55345 433 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 STRN3Q13033 797 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 PAK1Q13153 545 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 MORC3Q14149 939 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 PWP2Q15269 919 aaKnown RBP10.12□□□□□ -0.79
USP4-202ENST00000351842 TRIM60Q495X7 471 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 DCAF17Q5H9S7 520 aaPredicted RBP10.12□□□□□ -0.79
USP4-202ENST00000351842 KIAA0319LQ8IZA0 1049 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 CSGALNACT2Q8N6G5 542 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 SPC24Q8NBT2 197 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 DHX33Q9H6R0 707 aaKnown RBP10.12□□□□□ -0.79
USP4-202ENST00000351842 DBR1Q9UK59 544 aaKnown RBP10.12□□□□□ -0.79
USP4-202ENST00000351842 STK24Q9Y6E0 443 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 C5orf42Q9H799 3197 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 ERLIN2O94905 339 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 ACOT2P49753 483 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 LIG4P49917 911 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 TLE2Q04725 743 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms