RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 GLYCTKQ8IVS8 523 aa24.06■■□□□ 1.44
UPF3A-201ENST00000351487 C12orf56Q8IXR9 622 aa24.06■■□□□ 1.44
UPF3A-201ENST00000351487 IL31RAQ8NI17 732 aa24.06■■□□□ 1.44
UPF3A-201ENST00000351487 RFFLQ8WZ73 363 aa24.06■■□□□ 1.44
UPF3A-201ENST00000351487 HES6Q96HZ4 224 aa24.06■■□□□ 1.44
UPF3A-201ENST00000351487 RUFY1Q96T51 708 aa24.06■■□□□ 1.44
UPF3A-201ENST00000351487 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.06■■□□□ 1.441e-8■■■■□ 25.1
UPF3A-201ENST00000351487 TMEM206Q9H813 350 aa24.06■■□□□ 1.44
UPF3A-201ENST00000351487 UBIAD1Q9Y5Z9 338 aa24.06■■□□□ 1.44
UPF3A-201ENST00000351487 DDX39AO00148 427 aaKnown RBP24.05■■□□□ 1.44
UPF3A-201ENST00000351487 NFIBO00712 420 aa24.05■■□□□ 1.44
UPF3A-201ENST00000351487 FAM153BP0C7A2 387 aa24.05■■□□□ 1.44
UPF3A-201ENST00000351487 FAM153CQ494X1 144 aa24.05■■□□□ 1.44
UPF3A-201ENST00000351487 MCF2L2Q86YR7 1114 aa24.05■■□□□ 1.44
UPF3A-201ENST00000351487 IQCKQ8N0W5 287 aa24.05■■□□□ 1.44
UPF3A-201ENST00000351487 PRPF38AQ8NAV1 312 aaKnown RBP24.05■■□□□ 1.44
UPF3A-201ENST00000351487 LMO3Q8TAP4 145 aa24.05■■□□□ 1.44
UPF3A-201ENST00000351487 ZIM3Q96PE6 472 aa24.05■■□□□ 1.44
UPF3A-201ENST00000351487 FAM153AQ9UHL3 310 aa24.05■■□□□ 1.44
UPF3A-201ENST00000351487 NOC2LQ9Y3T9 749 aaKnown RBP24.05■■□□□ 1.44
UPF3A-201ENST00000351487 BHMG1C9JSJ3 638 aaPredicted RBP24.04■■□□□ 1.44
UPF3A-201ENST00000351487 CCDC188H7C350 402 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 WDR46O15213 610 aaKnown RBP24.04■■□□□ 1.44
UPF3A-201ENST00000351487 LYPLA2O95372 231 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 PCNX4Q63HM2 1172 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 IFT81Q8WYA0 676 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 AGO4Q9HCK5 861 aaKnown RBP24.04■■□□□ 1.44
UPF3A-201ENST00000351487 STK32BQ9NY57 414 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 ZHX2Q9Y6X8 837 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 KIF22Q14807 665 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 TKFCQ3LXA3 575 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 INTS8Q75QN2 995 aaKnown RBP24.04■■□□□ 1.44
UPF3A-201ENST00000351487 DAAM2Q86T65 1068 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 KLHL7Q8IXQ5 586 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 LPAR1Q92633 364 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 HOOK2Q96ED9 719 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 ZNF341Q9BYN7 854 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 ISCUQ9H1K1 167 aa24.04■■□□□ 1.44
UPF3A-201ENST00000351487 RARRES1P49788 294 aa24.03■■□□□ 1.44
UPF3A-201ENST00000351487 ITGB3BPQ13352 177 aaPredicted RBP24.03■■□□□ 1.44
UPF3A-201ENST00000351487 TAF1DQ9H5J8 278 aaPredicted RBP24.03■■□□□ 1.44
UPF3A-201ENST00000351487 ZNRF3Q9ULT6 936 aa24.03■■□□□ 1.44
UPF3A-201ENST00000351487 TMCO5BA8MYB1 307 aa24.03■■□□□ 1.44
UPF3A-201ENST00000351487 P4HA2O15460 535 aa24.03■■□□□ 1.44
UPF3A-201ENST00000351487 KRT13P13646 458 aa24.03■■□□□ 1.44
UPF3A-201ENST00000351487 MAP3K20Q9NYL2 800 aaKnown RBP24.03■■□□□ 1.44
UPF3A-201ENST00000351487 PHF20L1A8MW92 1017 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 CUL1Q13616 776 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 TTMPQ5BVD1 217 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 PHLDB3Q6NSJ2 640 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 CD302Q8IX05 232 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 SAMD3Q8N6K7 520 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 VTI1AQ96AJ9 217 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 CCDC43Q96MW1 224 aaKnown RBP24.02■■□□□ 1.44
UPF3A-201ENST00000351487 ST6GALNAC4Q9H4F1 302 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 TTC7AQ9ULT0 858 aaPredicted RBP24.02■■□□□ 1.44
UPF3A-201ENST00000351487 WNT10BO00744 389 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 PLS3P13797 630 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 QARSP47897 775 aaKnown RBP24.02■■□□□ 1.44
UPF3A-201ENST00000351487 ERVK-9P63128 1117 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 MRPS9P82933 396 aaKnown RBP24.02■■□□□ 1.44
UPF3A-201ENST00000351487 PPATQ06203 517 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 CFAP58Q5T655 872 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 CTNNBL1Q8WYA6 563 aaPredicted RBP24.02■■□□□ 1.44
UPF3A-201ENST00000351487 ACCSQ96QU6 501 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 PLEKHA4Q9H4M7 779 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 PKD2L1Q9P0L9 805 aa24.02■■□□□ 1.44
UPF3A-201ENST00000351487 MAPK13O15264 365 aa24.01■■□□□ 1.43
UPF3A-201ENST00000351487 SLC35G2Q8TBE7 412 aa24.01■■□□□ 1.43
UPF3A-201ENST00000351487 ARL8AQ96BM9 186 aa24.01■■□□□ 1.43
UPF3A-201ENST00000351487 TIPINQ9BVW5 301 aa24.01■■□□□ 1.43
UPF3A-201ENST00000351487 OSGEPQ9NPF4 335 aa24.01■■□□□ 1.43
UPF3A-201ENST00000351487 AMFRQ9UKV5 643 aa24.01■■□□□ 1.43
UPF3A-201ENST00000351487 SART1O43290 800 aaKnown RBP24■■□□□ 1.43
UPF3A-201ENST00000351487 BUB1BO60566 1050 aaPredicted RBP24■■□□□ 1.43
UPF3A-201ENST00000351487 PPFIA4O75335 1185 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 ECHS1P30084 290 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 HSPA9P38646 679 aaKnown RBP24■■□□□ 1.43
UPF3A-201ENST00000351487 NIM1KQ8IY84 436 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 SYTL5Q8TDW5 730 aaPredicted RBP24■■□□□ 1.43
UPF3A-201ENST00000351487 PIK3R5Q8WYR1 880 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 KIAA1683Q9H0B3 1180 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 SLITRK6Q9H5Y7 841 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 SLC38A10Q9HBR0 1119 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 TBC1D22BQ9NU19 505 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 IGSF9BQ9UPX0 1349 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 VAMP7P51809 220 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 SNRPFP62306 86 aaKnown RBP24■■□□□ 1.43
UPF3A-201ENST00000351487 MTMR1Q13613 665 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 PLS1Q14651 629 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 TRADDQ15628 312 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 PTPROQ16827 1216 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 EMSYQ7Z589 1322 aa24■■□□□ 1.43
UPF3A-201ENST00000351487 KCNA3P22001 575 aa23.99■■□□□ 1.43
UPF3A-201ENST00000351487 DLG4P78352 724 aa23.99■■□□□ 1.43
UPF3A-201ENST00000351487 SKOR1P84550 965 aa23.99■■□□□ 1.43
UPF3A-201ENST00000351487 GTF2BQ00403 316 aa23.99■■□□□ 1.43
UPF3A-201ENST00000351487 NBPF9Q3BBW0 867 aa23.99■■□□□ 1.43
UPF3A-201ENST00000351487 EPC2Q52LR7 807 aa23.99■■□□□ 1.43
UPF3A-201ENST00000351487 FOXR1Q6PIV2 292 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms