RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CRNKL1Q9BZJ0 848 aaKnown RBP7.34□□□□□ -1.24
VPS39-202ENST00000348544 RNPEPL1Q9HAU8 725 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 ETNK1Q9HBU6 452 aa7.34□□□□□ -1.24
VPS39-202ENST00000348544 ARPP21Q9UBL0 812 aaPredicted RBP7.34□□□□□ -1.24
VPS39-202ENST00000348544 NCANO14594 1321 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 KLRF2D3W0D1 207 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 SMIM24O75264 130 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 NPTXRO95502 500 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 TPBGLP0DKB5 382 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 PLCG2P16885 1265 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 CALB2P22676 271 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 RAD23BP54727 409 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 ROR2Q01974 943 aaKnown RBP7.33□□□□□ -1.24
VPS39-202ENST00000348544 EPHA7Q15375 998 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 GRIPAP1Q4V328 841 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 PPP1R15BQ5SWA1 713 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 SOGA3Q5TF21 947 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 TAOK1Q7L7X3 1001 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 ANKRD42Q8N9B4 389 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 SLC30A5Q8TAD4 765 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 TEKT4Q8WW24 435 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 CKAP2Q8WWK9 683 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 ARHGEF2Q92974 986 aaKnown RBP7.33□□□□□ -1.24
VPS39-202ENST00000348544 TMEM47Q9BQJ4 181 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 CARD9Q9H257 536 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 C6orf50Q9HD87 102 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 ATP8A2Q9NTI2 1148 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 MCM9Q9NXL9 1143 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 TMOD4Q9NZQ9 345 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 ANKIB1Q9P2G1 1089 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 CTNNAL1Q9UBT7 734 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 INTUQ9ULD6 942 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 A0A1B0GVG6 124 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 HIP1RO75146 1068 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 PHF2O75151 1096 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 KRT13P13646 458 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 IL2RBP14784 551 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 ATP6V1C1P21283 382 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 ABCB4P21439 1286 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 NR2F2P24468 414 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 KLRK1P26718 216 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 SKIV2L2P42285 1042 aaKnown RBP7.33□□□□□ -1.24
VPS39-202ENST00000348544 MARCKSL1P49006 195 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 CASP5P51878 434 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 MXRA7P84157 204 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 EXOC3L4Q17RC7 722 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 GLYCTKQ8IVS8 523 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 REXO1Q8N1G1 1221 aaKnown RBP7.33□□□□□ -1.24
VPS39-202ENST00000348544 GALNT15Q8N3T1 639 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 SLC44A5Q8NCS7 719 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 PHC3Q8NDX5 983 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 SUPT20HQ8NEM7 779 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 SH3RF3Q8TEJ3 882 aaPredicted RBP7.33□□□□□ -1.24
VPS39-202ENST00000348544 STK32AQ8WU08 396 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 RFFLQ8WZ73 363 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 FAM84BQ96KN1 310 aaPredicted RBP7.33□□□□□ -1.24
VPS39-202ENST00000348544 TMEM237Q96Q45 408 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 RPS6KC1Q96S38 1066 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 SPZ1Q9BXG8 430 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 CYP39A1Q9NYL5 469 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 COG5Q9UP83 839 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 C2CD2Q9Y426 696 aa7.33□□□□□ -1.24
VPS39-202ENST00000348544 ERVV-1B6SEH8 477 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 E9PMD0 336 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 TP73O15350 636 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 GFPT2O94808 682 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 AFPP02771 609 aaKnown RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 ALAS1P13196 640 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 RARGP13631 454 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 ANXA13P27216 316 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 GNA11P29992 359 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 PRDX5P30044 214 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 HOXA7P31268 230 aaPredicted RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 HOXD13P35453 343 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 GCLCP48506 637 aaPredicted RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 PEX5P50542 639 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 MRPS35P82673 323 aaKnown RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 ORC2Q13416 577 aaPredicted RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 PDIA5Q14554 519 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 TMEM266Q2M3C6 531 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 SGSM1Q2NKQ1 1148 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 CCDC152Q4G0S7 254 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 CMPK2Q5EBM0 449 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 KRT79Q5XKE5 535 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 RNF43Q68DV7 783 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 CROCCP2Q86T23 111 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 FAM13CQ8NE31 585 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 ASAP3Q8TDY4 903 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 TGS1Q96RS0 853 aaKnown RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 ZCWPW1Q9H0M4 648 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 STMN4Q9H169 189 aaPredicted RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 MYLK2Q9H1R3 596 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 LRMDAQ9H2I8 198 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 AAASQ9NRG9 546 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 EMILIN3Q9NT22 766 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 TCRBV7S2A1N4TA0A589 114 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 LRRD1A4D1F6 860 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 ABLIM1O14639 778 aa7.32□□□□□ -1.24
VPS39-202ENST00000348544 SP100P23497 879 aaPredicted RBP7.32□□□□□ -1.24
VPS39-202ENST00000348544 PCK1P35558 622 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms