RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 NDE1Q9NXR1 346 aa5.12□□□□□ -1.59
CSMD3-203ENST00000343508 CUL3Q13618 768 aa5.12□□□□□ -1.59
CSMD3-203ENST00000343508 NLRX1Q86UT6 975 aa5.12□□□□□ -1.59
CSMD3-203ENST00000343508 RBBP8NLQ8NC74 664 aaPredicted RBP5.12□□□□□ -1.59
CSMD3-203ENST00000343508 ZNF564Q8TBZ8 553 aaPredicted RBP5.12□□□□□ -1.59
CSMD3-203ENST00000343508 CENPTQ96BT3 561 aa5.12□□□□□ -1.59
CSMD3-203ENST00000343508 TECPR2O15040 1411 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 XDHP47989 1333 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 ALDH1B1P30837 517 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 KRT80Q6KB66 452 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 KCTD1Q719H9 257 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 FUKQ8N0W3 1084 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 TPCN2Q8NHX9 752 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 PIGOQ8TEQ8 1089 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 DEPDC1BQ8WUY9 529 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 DUSP10Q9Y6W6 482 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 MED7O43513 233 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 CD44P16070 742 aaKnown RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 KRT17Q04695 432 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 TRIM28Q13263 835 aaKnown RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 USP49Q70CQ1 688 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 UBN1Q9NPG3 1134 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 GDF3Q9NR23 364 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 COPEO14579 308 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 HAUS5O94927 633 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 ARFIP2P53365 341 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 BASP1P80723 227 aaKnown RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 GRIN1Q05586 938 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 PSMD6Q15008 389 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 DNAL1Q4LDG9 190 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 TMEM154Q6P9G4 183 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 STK33Q9BYT3 514 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 A0A0A6YYK5 440 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 KCNA3P22001 575 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 MARK3P27448 753 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 SLC12A2P55011 1212 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 MED21Q13503 144 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 EDRF1Q3B7T1 1238 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 ENOSF1Q7L5Y1 443 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 CHURC1Q8WUH1 139 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 ZMAT2Q96NC0 199 aaKnown RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 TMEM120BA0PK00 339 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 NR3C1P04150 777 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 ACADSP16219 412 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 KLRC1P26715 233 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 FXR2P51116 673 aaKnown RBP eCLIP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 GRM4Q14833 912 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 HAUS8Q9BT25 410 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 MAD1L1Q9Y6D9 718 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 CRCPO75575 148 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 TTC4O95801 387 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 NCF2P19878 526 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 BTDP43251 543 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 RFX5P48382 616 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 NPEPPSP55786 919 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 CYP4A11Q02928 519 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 LONRF1Q17RB8 773 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 RAPH1Q70E73 1250 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 KCTD6Q8NC69 237 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 ATL2Q8NHH9 583 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 SDCCAG3Q96C92 435 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 CAPN6Q9Y6Q1 641 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 USP17L3A6NCW0 530 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 USP17L4A6NCW7 530 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 LRRC10BA6NIK2 292 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 SLC16A3O15427 465 aaKnown RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 KRT38O76015 456 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 LDHAP00338 332 aaKnown RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 HNRNPCP07910 306 aaKnown RBP eCLIP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 C1orf146Q5VVC0 180 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 USP17L1Q7RTZ2 530 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 ILDR1Q86SU0 546 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 RASSF3Q86WH2 238 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 OR2W6PQ8NHA6 318 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 DNAJC9Q8WXX5 260 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 CCT6BQ92526 530 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 CCDC127Q96BQ5 260 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 MIEF2Q96C03 454 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 MAGEB18Q96M61 343 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 ISCA1Q9BUE6 129 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 KBTBD4Q9NVX7 518 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 CNOT7Q9UIV1 285 aaKnown RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 ENO4A6NNW6 628 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 ZBTB5O15062 677 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 KRT1P04264 644 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 TOB1P50616 345 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 STAT2P52630 851 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 BTNL9Q6UXG8 535 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 SRBD1Q8N5C6 995 aaKnown RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 SERPINB13Q9UIV8 391 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 MAGEA13PA6NCF6 341 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 FTLP02792 175 aaPredicted RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 STMN1P16949 149 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 RARS2Q5T160 578 aaKnown RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 ANO5Q75V66 913 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 CASKIN2Q8WXE0 1202 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 TRIM15Q9C019 465 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 CARD9Q9H257 536 aa5.11□□□□□ -1.59
CSMD3-203ENST00000343508 DBR1Q9UK59 544 aaKnown RBP5.11□□□□□ -1.59
CSMD3-203ENST00000343508 POTEMA6NI47 508 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms