RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 HERC5Q9UII4 1024 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 OVOS2A0A0J9YW53 1432 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 OVOS2Q6IE36 1432 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 FAM25EA8MYX2 175 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 POLR2EP19388 210 aaKnown RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 SYKP43405 635 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 LSRQ86X29 649 aaPredicted RBP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 EGFL6Q8IUX8 553 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 MBIPQ9NS73 344 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 A8MUI8 341 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 TMCC1O94876 653 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 GHRP10912 638 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 MAP2K5Q13163 448 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 CREB3L3Q68CJ9 461 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 TTBK2Q6IQ55 1244 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 C8orf76Q96K31 380 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 ANO3Q9BYT9 981 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 CAPN9O14815 690 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 GNPATO15228 680 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 ESCO1Q5FWF5 840 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 SYNDIG1Q9H7V2 258 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 ERBB3P21860 1342 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 PLCH2O75038 1416 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 CUTAO60888 179 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 AADACL2Q6P093 401 aa3.8□□□□□ -1.8
SYNE1-201ENST00000341594 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.8□□□□□ -1.8
SYNE1-201ENST00000341594 COL22A1Q8NFW1 1626 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 FAM237AA0A1B0GTK4 181 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 THAP12O43422 761 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CCZ1BP86790 482 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CCZ1P86791 482 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 KLC3Q6P597 504 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 STX12Q86Y82 276 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 USP40Q9NVE5 1235 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 IQSEC2Q5JU85 1478 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 PKD1L3Q7Z443 1732 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 NCOR1O75376 2440 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 A0A1W2PRG0 241 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CABP4P57796 275 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 SPATS1Q496A3 300 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 TRAPPC9Q96Q05 1148 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 SPAG5Q96R06 1193 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 TSC22D3Q99576 134 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 FAM96AQ9H5X1 160 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 PNMA8BQ9ULN7 279 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 L1RE1Q9UN81 338 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 PP2D1A8MPX8 630 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 B4E1Z4 1266 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 PUS10Q3MIT2 529 aaKnown RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CADPS2Q86UW7 1296 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 PACS2Q86VP3 889 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 ENOX1Q8TC92 643 aaKnown RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 PDCD6IPQ8WUM4 868 aaKnown RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 VPS50Q96JG6 964 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 PRDM5Q9NQX1 630 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 MROH7Q68CQ1 1323 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 BAG3O95817 575 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CALML3P27482 149 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 TBC1D8BQ0IIM8 1120 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 TMEM67Q5HYA8 995 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CCDC26Q8TAB7 109 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 UBN1Q9NPG3 1134 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CEMIPQ8WUJ3 1361 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 MYL5Q02045 173 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 KAT2BQ92831 832 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CCDC134Q9H6E4 229 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 L3MBTL1Q9Y468 752 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 PLXND1Q9Y4D7 1925 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CYP2D6P10635 497 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 RASA3Q14644 834 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 TMEM266Q2M3C6 531 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 SIRT2Q8IXJ6 389 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 SH3GL2Q99962 352 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 SLC39A2Q9NP94 309 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 YTHDC2Q9H6S0 1430 aaKnown RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 SLC5A9Q2M3M2 681 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CFAP157Q5JU67 520 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 BTNL9Q6UXG8 535 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 SH2D4AQ9H788 454 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 WDR37Q9Y2I8 494 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CETN2P41208 172 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 NOP14P78316 857 aaKnown RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CYB5RLQ6IPT4 315 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 KIAA0825Q8IV33 1275 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 AGR3Q8TD06 166 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 DMAP1Q9NPF5 467 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 PI4KAP2A4QPH2 592 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 TUBA1BP68363 451 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 HLFQ16534 295 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 HYAL4Q2M3T9 481 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 GJB7Q6PEY0 223 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 TUBA1AQ71U36 451 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 RBM12BQ8IXT5 1001 aaKnown RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 CPXCR1Q8N123 301 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 PI4KAP1Q8N8J0 262 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 COG1Q8WTW3 980 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 XAB2Q9HCS7 855 aaKnown RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 FAM207AQ9NSI2 230 aaPredicted RBP3.79□□□□□ -1.8
SYNE1-201ENST00000341594 SH3TC1Q8TE82 1336 aa3.79□□□□□ -1.8
SYNE1-201ENST00000341594 DISP1Q96F81 1524 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms