RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 CORO7P57737 925 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 SLC7A5Q01650 507 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 TRIM9Q9C026 710 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 MYH2Q9UKX2 1941 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 RTN2O75298 545 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 VGLL3A8MV65 326 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 GRAPQ13588 217 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 GRAPLQ8TC17 118 aaPredicted RBP10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 RPS6KC1Q96S38 1066 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 TMEM94Q12767 1356 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 IFRD2Q12894 506 aaPredicted RBP10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 ITIH4Q14624 930 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 ICA1LQ8NDH6 482 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 NUP85Q9BW27 656 aa10.98□□□□□ -0.65
CCDC88A-202ENST00000336838 MRPS35P82673 323 aaKnown RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 NUDCD1Q96RS6 583 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 MAGEB5Q9BZ81 275 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 WWP1Q9H0M0 922 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 WDR64B1ANS9 1081 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 HGSO14964 777 aaPredicted RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 PHF2O75151 1096 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 ITIH2P19823 946 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 IRX5P78411 483 aaPredicted RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 HPS3Q969F9 1004 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 MMS19Q96T76 1030 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 CES2O00748 559 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 MCF2P10911 925 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 H2AFXP16104 143 aaPredicted RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 DAB2IPQ5VWQ8 1189 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 RAPH1Q70E73 1250 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 PHEXP78562 749 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 ILF2Q12905 390 aaKnown RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 ZNF677Q86XU0 584 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 METTL13Q8N6R0 699 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 ZNF564Q8TBZ8 553 aaPredicted RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 SMCR8Q8TEV9 937 aaPredicted RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 CEMIPQ8WUJ3 1361 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 PPIP5K2O43314 1243 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 SERPINB10P48595 397 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 BASP1P80723 227 aaKnown RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 CYP4A11Q02928 519 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 ADSSL1Q8N142 457 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 CHAMP1Q96JM3 812 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 CCT8L2Q96SF2 557 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 PHF20Q9BVI0 1012 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 SUCLA2Q9P2R7 463 aaPredicted RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 ANAPC7Q9UJX3 599 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 DNAJC12Q9UKB3 198 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 GDAQ9Y2T3 454 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 PSMA2P25787 234 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 TCP10Q12799 353 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 SPDYCQ5MJ68 293 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 NFRKBQ6P4R8 1299 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 CCDC137Q6PK04 289 aaKnown RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 TRAPPC11Q7Z392 1133 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 SPDL1Q96EA4 605 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 NAA35Q5VZE5 725 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 ADAT2Q7Z6V5 191 aaKnown RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 ATL2Q8NHH9 583 aa10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 USP15Q9Y4E8 981 aaPredicted RBP10.97□□□□□ -0.65
CCDC88A-202ENST00000336838 GOLGA8HP0CJ92 632 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 PIH1D3Q9NQM4 214 aaKnown RBP10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 FEM1BQ9UK73 627 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 ESYT2A0FGR8 921 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 HSPA13P48723 471 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 SBK1Q52WX2 424 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 EIF1ADQ8N9N8 165 aaKnown RBP10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 HDAC11Q96DB2 347 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 ISCA1Q9BUE6 129 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 SRRM3A6NNA2 597 aaPredicted RBP10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 LSP1P33241 339 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 LAMB3Q13751 1172 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 NAB2Q15742 525 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 DAGLBQ8NCG7 672 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 AP1M1Q9BXS5 423 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 PARVAQ9NVD7 372 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 ADAM22Q9P0K1 906 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 PIK3R2O00459 728 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 HAUS5O94927 633 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 ASNSP08243 561 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 HDAC4P56524 1084 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 GFPT1Q06210 699 aaPredicted RBP10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 BSPRYQ5W0U4 402 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 CCNI2Q6ZMN8 369 aaPredicted RBP10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 CYFIP1Q7L576 1253 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 RNPC3Q96LT9 517 aaKnown RBP10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 DNAJC7Q99615 494 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 SNX25Q9H3E2 840 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 COL15A1P39059 1388 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 ERCC6L2Q5T890 1561 aa10.96□□□□□ -0.65
CCDC88A-202ENST00000336838 ALAS1P13196 640 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 TMPRSS15P98073 1019 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 KDM7AQ6ZMT4 941 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 NOD1Q9Y239 953 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 MROH7-TTC4A0A0A0MT08 1334 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 NPR1P16066 1061 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 MUTP22033 750 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 CIITAP33076 1130 aa10.96□□□□□ -0.66
CCDC88A-202ENST00000336838 NPEPPSP55786 919 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms