RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 TECP42680 631 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 FBXW4P57775 412 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.56□□□□□ -1.36
CSMD1-201ENST00000335551 TTC33Q6PID6 262 aaPredicted RBP6.56□□□□□ -1.36
CSMD1-201ENST00000335551 TRPM8Q7Z2W7 1104 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 MICALL2Q8IY33 904 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 EXOC8Q8IYI6 725 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 ZNF483Q8TF39 744 aaPredicted RBP6.56□□□□□ -1.36
CSMD1-201ENST00000335551 CYFIP2Q96F07 1278 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 USP28Q96RU2 1077 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 MROH5Q6ZUA9 1318 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 FAM107AO95990 144 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 TFDP1Q14186 410 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 PRUNE1Q86TP1 453 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 SETD3Q86TU7 594 aaPredicted RBP6.56□□□□□ -1.36
CSMD1-201ENST00000335551 GJA10Q969M2 543 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 ALKBH8Q96BT7 664 aaKnown RBP6.56□□□□□ -1.36
CSMD1-201ENST00000335551 CYP4F11Q9HBI6 524 aa6.56□□□□□ -1.36
CSMD1-201ENST00000335551 SYNJ2BP-COX16A0A087WUM0 186 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 LRRN2O75325 713 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 SFSWAPQ12872 951 aaKnown RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 FBXW10Q5XX13 1052 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 ATP8B4Q8TF62 1192 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 TEKT4Q8WW24 435 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 MLPHQ9BV36 600 aaPredicted RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 C6orf203Q9P0P8 240 aaPredicted RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 COX16Q9P0S2 106 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 ZBED4O75132 1171 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 CALB1P05937 261 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 NFRKBQ6P4R8 1299 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 LRIG3Q6UXM1 1119 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 ZNF654Q8IZM8 581 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 GLG1Q92896 1179 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 CPSF3Q9UKF6 684 aaKnown RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 FLT4P35916 1363 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 TLR3O15455 904 aaKnown RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 KLHL2O95198 593 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 CTTNQ14247 550 aaKnown RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 DPCR1Q3MIW9 517 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 MICU2Q8IYU8 434 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 COG1Q8WTW3 980 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 OSBPL10Q9BXB5 764 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 RMI1Q9H9A7 625 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 SEC24DO94855 1032 aaPredicted RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 ATXN3P54252 364 aaPredicted RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.55□□□□□ -1.361e-7■□□□□ 9.3
CSMD1-201ENST00000335551 DKK3Q9UBP4 350 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 PSMA2P25787 234 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 IYDQ6PHW0 289 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 RRM2BQ7LG56 351 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 ANKRD13CQ8N6S4 541 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 SNRNP27Q8WVK2 155 aaKnown RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 RMDN1Q96DB5 314 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 CCT8L2Q96SF2 557 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 UBE2OQ9C0C9 1292 aaKnown RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 TAF1DQ9H5J8 278 aaPredicted RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 HACD3Q9P035 362 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 CHMP2BQ9UQN3 213 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 FAM25AB3EWG3 89 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 FAM25CB3EWG5 89 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 FAM25GB3EWG6 89 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 IRS4O14654 1257 aaPredicted RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 GFPT2O94808 682 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 HADHAP40939 763 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 ALDH18A1P54886 795 aaKnown RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 PTGDRQ13258 359 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 PCYOX1LQ8NBM8 494 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 PLEKHA8Q96JA3 519 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 TINF2Q9BSI4 451 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 SAP30BPQ9UHR5 308 aaKnown RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 NIP7Q9Y221 180 aaKnown RBP eCLIP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 MLH1P40692 756 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 CORO7P57737 925 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 SNAP25P60880 206 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 AKAP4Q5JQC9 854 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 FAM173BQ6P4H8 233 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 KRT27Q7Z3Y8 459 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 RYBPQ8N488 228 aaPredicted RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 STAMQ92783 540 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 ETAA1Q9NY74 926 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 ZFATQ9P243 1243 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 MTO1Q9Y2Z2 717 aaKnown RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 RBBP7Q16576 425 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 OTUD7BQ6GQQ9 843 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 LVRNQ6Q4G3 990 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 C11orf57Q6ZUT1 292 aaPredicted RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 NOP9Q86U38 636 aaKnown RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 PSTPIP2Q9H939 334 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 CCDC87Q9NVE4 849 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 BABAM1Q9NWV8 329 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 IVNS1ABPQ9Y6Y0 642 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 HOXB7P09629 217 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 TPP2P29144 1249 aaPredicted RBP6.55□□□□□ -1.36
CSMD1-201ENST00000335551 ODR4Q5SWX8 454 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 CLEC4FQ8N1N0 589 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 C8orf58Q8NAV2 365 aa6.55□□□□□ -1.36
CSMD1-201ENST00000335551 C5orf58C9J3I9 102 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 KRT31Q15323 416 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 ARMT1Q9H993 441 aa6.54□□□□□ -1.36
CSMD1-201ENST00000335551 FAM187AA6NFU0 413 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms