RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 MTUS1Q9ULD2 1270 aa17.62■□□□□ 0.41
CLN3-201ENST00000333496 XIRP2A4UGR9 3374 aa17.62■□□□□ 0.41
CLN3-201ENST00000333496 SRGAP2CP0DJJ0 459 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 FAM189BP81408 668 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 RAB34Q9BZG1 259 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 MINDY3Q9H8M7 445 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 MTMR6Q9Y217 621 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 ADGRA3Q8IWK6 1321 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 USO1O60763 962 aaKnown RBP17.61■□□□□ 0.41
CLN3-201ENST00000333496 STAG3L1P0CL83 205 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 IBSPP21815 317 aaPredicted RBP17.61■□□□□ 0.41
CLN3-201ENST00000333496 IGFBP4P22692 258 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 ARL2P36404 184 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 GATMP50440 423 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 RESTQ13127 1097 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 ARL6IP4Q66PJ3 421 aaKnown RBP17.61■□□□□ 0.41
CLN3-201ENST00000333496 SNX29Q8TEQ0 813 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 CCDC43Q96MW1 224 aaKnown RBP17.61■□□□□ 0.41
CLN3-201ENST00000333496 KIAA1024Q9UPX6 916 aa17.61■□□□□ 0.41
CLN3-201ENST00000333496 MYH11P35749 1972 aa17.6■□□□□ 0.41
CLN3-201ENST00000333496 ASAP2O43150 1006 aa17.6■□□□□ 0.41
CLN3-201ENST00000333496 ZSCAN20P17040 1043 aaPredicted RBP17.6■□□□□ 0.41
CLN3-201ENST00000333496 GRB10Q13322 594 aa17.6■□□□□ 0.41
CLN3-201ENST00000333496 FAM173BQ6P4H8 233 aa17.6■□□□□ 0.41
CLN3-201ENST00000333496 HSCBQ8IWL3 235 aa17.6■□□□□ 0.41
CLN3-201ENST00000333496 FIBCD1Q8N539 461 aa17.6■□□□□ 0.41
CLN3-201ENST00000333496 RNF149Q8NC42 400 aa17.6■□□□□ 0.41
CLN3-201ENST00000333496 ASAP3Q8TDY4 903 aa17.6■□□□□ 0.41
CLN3-201ENST00000333496 INO80BQ9C086 356 aaPredicted RBP17.6■□□□□ 0.41
CLN3-201ENST00000333496 GPRC5CQ9NQ84 441 aa17.6■□□□□ 0.41
CLN3-201ENST00000333496 DDX19AQ9NUU7 478 aaKnown RBP17.6■□□□□ 0.41
CLN3-201ENST00000333496 PCDHB7Q9Y5E2 793 aa17.6■□□□□ 0.41
CLN3-201ENST00000333496 VWA3AA6NCI4 1184 aa17.59■□□□□ 0.41
CLN3-201ENST00000333496 POU3F3P20264 500 aaPredicted RBP17.59■□□□□ 0.41
CLN3-201ENST00000333496 SFPQP23246 707 aaKnown RBP eCLIP17.59■□□□□ 0.41
CLN3-201ENST00000333496 GLRA2P23416 452 aa17.59■□□□□ 0.41
CLN3-201ENST00000333496 MXD4Q14582 209 aaPredicted RBP17.59■□□□□ 0.41
CLN3-201ENST00000333496 SF3A1Q15459 793 aaKnown RBP17.59■□□□□ 0.41
CLN3-201ENST00000333496 EPC2Q52LR7 807 aa17.59■□□□□ 0.41
CLN3-201ENST00000333496 FAM102BQ5T8I3 360 aa17.59■□□□□ 0.41
CLN3-201ENST00000333496 MAEAQ7L5Y9 396 aa17.59■□□□□ 0.41
CLN3-201ENST00000333496 SRGAP1Q7Z6B7 1085 aa17.59■□□□□ 0.41
CLN3-201ENST00000333496 GDPD5Q8WTR4 605 aa17.59■□□□□ 0.41
CLN3-201ENST00000333496 ELAC1Q9H777 363 aaKnown RBP17.59■□□□□ 0.41
CLN3-201ENST00000333496 LRFN2Q9ULH4 789 aa17.59■□□□□ 0.41
CLN3-201ENST00000333496 MTCH2Q9Y6C9 303 aa17.59■□□□□ 0.41
CLN3-201ENST00000333496 STK24Q9Y6E0 443 aa17.59■□□□□ 0.41
CLN3-201ENST00000333496 A0A0C4DFX4 3053 aa17.58■□□□□ 0.41
CLN3-201ENST00000333496 STX6O43752 255 aa17.58■□□□□ 0.41
CLN3-201ENST00000333496 PTENP60484 403 aa17.58■□□□□ 0.41
CLN3-201ENST00000333496 CAPSQ13938 189 aa17.58■□□□□ 0.41
CLN3-201ENST00000333496 BTG3Q14201 252 aaPredicted RBP17.58■□□□□ 0.41
CLN3-201ENST00000333496 PAN2Q504Q3 1202 aaKnown RBP17.58■□□□□ 0.41
CLN3-201ENST00000333496 KRT79Q5XKE5 535 aa17.58■□□□□ 0.41
CLN3-201ENST00000333496 PADI6Q6TGC4 694 aa17.58■□□□□ 0.41
CLN3-201ENST00000333496 KCNK18Q7Z418 384 aa17.58■□□□□ 0.41
CLN3-201ENST00000333496 ECHDC2Q86YB7 292 aa17.58■□□□□ 0.41
CLN3-201ENST00000333496 TMEM192Q8IY95 271 aa17.58■□□□□ 0.41
CLN3-201ENST00000333496 CMTR2Q8IYT2 770 aaKnown RBP17.58■□□□□ 0.41
CLN3-201ENST00000333496 CLP1Q92989 425 aaKnown RBP17.58■□□□□ 0.41
CLN3-201ENST00000333496 POLR3FQ9H1D9 316 aaPredicted RBP17.58■□□□□ 0.41
CLN3-201ENST00000333496 CHST12Q9NRB3 414 aa17.58■□□□□ 0.41
CLN3-201ENST00000333496 RNF19AQ9NV58 838 aa17.58■□□□□ 0.41
CLN3-201ENST00000333496 TMEM161AQ9NX61 479 aa17.58■□□□□ 0.41
CLN3-201ENST00000333496 PLXNA4Q9HCM2 1894 aa17.58■□□□□ 0.4
CLN3-201ENST00000333496 A0A0U1RQF3 1178 aa17.58■□□□□ 0.4
CLN3-201ENST00000333496 E9PMD0 336 aa17.58■□□□□ 0.4
CLN3-201ENST00000333496 ATF7P17544 494 aaPredicted RBP17.58■□□□□ 0.4
CLN3-201ENST00000333496 GRIN1Q05586 938 aa17.58■□□□□ 0.4
CLN3-201ENST00000333496 POU5F1BQ06416 359 aa17.58■□□□□ 0.4
CLN3-201ENST00000333496 CATSPER4Q7RTX7 472 aa17.58■□□□□ 0.4
CLN3-201ENST00000333496 IFNLR1Q8IU57 520 aaPredicted RBP17.58■□□□□ 0.4
CLN3-201ENST00000333496 FBXO22Q8NEZ5 403 aa17.58■□□□□ 0.4
CLN3-201ENST00000333496 SAMD11Q96NU1 681 aa17.58■□□□□ 0.4
CLN3-201ENST00000333496 BHMT2Q9H2M3 363 aa17.58■□□□□ 0.4
CLN3-201ENST00000333496 PIN4Q9Y237 131 aaKnown RBP17.58■□□□□ 0.4
CLN3-201ENST00000333496 CLIC4Q9Y696 253 aa17.58■□□□□ 0.4
CLN3-201ENST00000333496 MRPL42Q9Y6G3 142 aaKnown RBP17.58■□□□□ 0.4
CLN3-201ENST00000333496 ARHGEF35A5YM69 484 aa17.57■□□□□ 0.4
CLN3-201ENST00000333496 FGFR1P11362 822 aa17.57■□□□□ 0.4
CLN3-201ENST00000333496 CYP11B2P19099 503 aa17.57■□□□□ 0.4
CLN3-201ENST00000333496 HOXA11P31270 313 aaPredicted RBP17.57■□□□□ 0.4
CLN3-201ENST00000333496 PTPAQ15257 358 aa17.57■□□□□ 0.4
CLN3-201ENST00000333496 HYIQ5T013 277 aa17.57■□□□□ 0.4
CLN3-201ENST00000333496 ZNF598Q86UK7 904 aaKnown RBP17.57■□□□□ 0.4
CLN3-201ENST00000333496 MCPH1Q8NEM0 835 aa17.57■□□□□ 0.4
CLN3-201ENST00000333496 PNMA5Q96PV4 448 aa17.57■□□□□ 0.4
CLN3-201ENST00000333496 TRAIPQ9BWF2 469 aa17.57■□□□□ 0.4
CLN3-201ENST00000333496 AGPAT5Q9NUQ2 364 aa17.57■□□□□ 0.4
CLN3-201ENST00000333496 DACT1Q9NYF0 836 aa17.57■□□□□ 0.4
CLN3-201ENST00000333496 VCANP13611 3396 aa17.56■□□□□ 0.4
CLN3-201ENST00000333496 C5orf67F2Z3F1 127 aa17.56■□□□□ 0.4
CLN3-201ENST00000333496 EYA4O95677 639 aa17.56■□□□□ 0.4
CLN3-201ENST00000333496 PHKA2P46019 1235 aa17.56■□□□□ 0.4
CLN3-201ENST00000333496 CCDC85BQ15834 202 aaPredicted RBP17.56■□□□□ 0.4
CLN3-201ENST00000333496 PPM1EQ8WY54 764 aa17.56■□□□□ 0.4
CLN3-201ENST00000333496 BSNDQ8WZ55 320 aa17.56■□□□□ 0.4
CLN3-201ENST00000333496 POLD4Q9HCU8 107 aa17.56■□□□□ 0.4
CLN3-201ENST00000333496 RNF216Q9NWF9 866 aaPredicted RBP17.56■□□□□ 0.4
CLN3-201ENST00000333496 MYO7AQ13402 2215 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms