RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 MOGSQ13724 837 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 CREB3L3Q68CJ9 461 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 C17orf53Q8N3J3 647 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 MARCH10Q8NA82 808 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF671Q8TAW3 534 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 USP40Q9NVE5 1235 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 MAP3K20Q9NYL2 800 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 BLOC1S6Q9UL45 172 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 ARL5AQ9Y689 179 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 PI4K2BG5E9Z4 385 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 SLC26A4O43511 780 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 GIT2Q14161 759 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 CCDC184Q52MB2 194 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 PYHIN1Q6K0P9 492 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 RASGEF1AQ8N9B8 481 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 CHMP7Q8WUX9 453 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 FNBP1Q96RU3 617 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 FAM213AQ9BRX8 229 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 BICC1Q9H694 974 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 NEUROD4Q9HD90 331 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 THRAP3Q9Y2W1 955 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF879B4DU55 563 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 PIP5K1CO60331 668 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 GNAI3P08754 354 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 LRRC74AQ0VAA2 488 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 FAM189A2Q15884 450 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 PABPC1LQ4VXU2 614 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 DGKKQ5KSL6 1271 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 SNF8Q96H20 258 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 SUN2Q9UH99 717 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 TBK1Q9UHD2 729 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 APOC1P02654 83 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 RALBP11234 206 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 GALK2Q01415 458 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 MAMLD1Q13495 774 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 CYP26C1Q6V0L0 522 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 SRLQ86TD4 932 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 MINDY2Q8NBR6 621 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 AZI2Q9H6S1 392 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 CYP4F11Q9HBI6 524 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 TUBG2Q9NRH3 451 aa8.11□□□□□ -1.11
LIMCH1-201ENST00000313860 LRRIQ3A6PVS8 624 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 H0Y8G0 127 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 AP3D1O14617 1153 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 CSPG5O95196 566 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 TUBB4AP04350 444 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 EIF3BP55884 814 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 RAB2AP61019 212 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 KRT32Q14532 448 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 TOMM20Q15388 145 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 ARMC4Q5T2S8 1044 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 NCOA7Q8NI08 942 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 SEC16BQ96JE7 1060 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 PPCSQ9HAB8 311 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF624Q9P2J8 865 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 BAIAP2Q9UQB8 552 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 OTOL1A6NHN0 477 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 SERPINH1P50454 418 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 ARMCX5Q6P1M9 558 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 RBM43Q6ZSC3 357 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 ZCCHC7Q8N3Z6 543 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 SYT2Q8N9I0 419 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 UCMAQ8WVF2 138 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 PDE11AQ9HCR9 933 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 CD209Q9NNX6 404 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 CNOT7Q9UIV1 285 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 AKR1B15C9JRZ8 316 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 ATG7O95352 703 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 IL6P05231 212 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 C2CD6Q53TS8 623 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 TNNI3KQ59H18 835 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 ZCCHC8Q6NZY4 707 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 THTPAQ9BU02 230 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 TRIM62Q9BVG3 475 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 RRAGDQ9NQL2 400 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 CTNND2Q9UQB3 1225 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 A0A0G2JND7 137 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 TRIM64A6NGJ6 449 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 TRIM64BA6NI03 449 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 EXTL3O43909 919 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 SUPT7LO94864 414 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 ACADSP16219 412 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 RAB32Q13637 225 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 DDB1Q16531 1140 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 TCEAL5Q5H9L2 206 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 BRMS1LQ5PSV4 323 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 NAA35Q5VZE5 725 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 APPL2Q8NEU8 664 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 RIBC2Q9H4K1 309 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 VPS4AQ9UN37 437 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 SGSM2O43147 1006 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 PRPF4O43172 522 aaKnown RBP eCLIP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 ARHGAP6O43182 974 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 ZPR1O75312 459 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 CHEK2O96017 543 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 ATF7P17544 494 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 SERPINB8P50452 374 aa8.1□□□□□ -1.11
LIMCH1-201ENST00000313860 DLG1Q12959 904 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms