RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 ZSCAN31Q96LW9 406 aaPredicted RBP5.7□□□□□ -1.5
CKS1B-201ENST00000308987 PARK7Q99497 189 aaKnown RBP5.7□□□□□ -1.5
CKS1B-201ENST00000308987 GDF15Q99988 308 aa5.7□□□□□ -1.5
CKS1B-201ENST00000308987 IDI2Q9BXS1 227 aa5.7□□□□□ -1.5
CKS1B-201ENST00000308987 SIL1Q9H173 461 aa5.7□□□□□ -1.5
CKS1B-201ENST00000308987 DCTN4Q9UJW0 460 aa5.7□□□□□ -1.5
CKS1B-201ENST00000308987 GJD2Q9UKL4 321 aa5.7□□□□□ -1.5
CKS1B-201ENST00000308987 PA2G4Q9UQ80 394 aaKnown RBP5.7□□□□□ -1.5
CKS1B-201ENST00000308987 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.7□□□□□ -1.5
CKS1B-201ENST00000308987 MAST3O60307 1309 aa5.7□□□□□ -1.5
CKS1B-201ENST00000308987 TTC41PQ6P2S7 1318 aa5.7□□□□□ -1.5
CKS1B-201ENST00000308987 RAD50Q92878 1312 aa5.7□□□□□ -1.5
CKS1B-201ENST00000308987 SALL1Q9NSC2 1324 aa5.7□□□□□ -1.5
CKS1B-201ENST00000308987 PARP14Q460N5 1801 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 SGSM2O43147 1006 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 TPM3P06753 285 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 LDHBP07195 334 aaKnown RBP5.69□□□□□ -1.5
CKS1B-201ENST00000308987 IFIT1P09914 478 aaKnown RBP5.69□□□□□ -1.5
CKS1B-201ENST00000308987 SLC5A1P13866 664 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 PI3P19957 117 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 HOXD10P28358 340 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 TPP2P29144 1249 aaPredicted RBP5.69□□□□□ -1.5
CKS1B-201ENST00000308987 UBXN2AP68543 259 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 PKP1Q13835 747 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 ATP2B3Q16720 1220 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 SHROOM1Q2M3G4 852 aaPredicted RBP5.69□□□□□ -1.5
CKS1B-201ENST00000308987 GAB4Q2WGN9 574 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 CCDC183Q5T5S1 534 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 RASIP1Q5U651 963 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 PCNX4Q63HM2 1172 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 LRFN4Q6PJG9 635 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 SASS6Q6UVJ0 657 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 CDH24Q86UP0 819 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 SLC17A8Q8NDX2 589 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 PIWIL2Q8TC59 973 aaKnown RBP5.69□□□□□ -1.5
CKS1B-201ENST00000308987 DACT3Q96B18 629 aaPredicted RBP5.69□□□□□ -1.5
CKS1B-201ENST00000308987 HOOK2Q96ED9 719 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 COX4I2Q96KJ9 171 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 TTC14Q96N46 770 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 HTATIP2Q9BUP3 242 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 WNT10AQ9GZT5 417 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 DUSP15Q9H1R2 295 aaPredicted RBP5.69□□□□□ -1.5
CKS1B-201ENST00000308987 ZMYND8Q9ULU4 1186 aaPredicted RBP5.69□□□□□ -1.5
CKS1B-201ENST00000308987 EXOC6BQ9Y2D4 811 aa5.69□□□□□ -1.5
CKS1B-201ENST00000308987 PNMA6EA0A0J9YXQ4 647 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 A0A1W2PPC1 479 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 SYCE3A1L190 88 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 TRIM75PA6NK02 468 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 HIP1O00291 1037 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 ENTPD3O75355 529 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 GLRX3O76003 335 aaKnown RBP5.68□□□□□ -1.5
CKS1B-201ENST00000308987 TFRCP02786 760 aaKnown RBP5.68□□□□□ -1.5
CKS1B-201ENST00000308987 TIMM10P62072 90 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 UBE2HP62256 183 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 HMGN5P82970 282 aaKnown RBP5.68□□□□□ -1.5
CKS1B-201ENST00000308987 RASGRF1Q13972 1273 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 NR0B2Q15466 257 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 FASTKD5Q7L8L6 764 aaKnown RBP5.68□□□□□ -1.5
CKS1B-201ENST00000308987 TICAM2Q86XR7 235 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 ERC1Q8IUD2 1116 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 HID1Q8IV36 788 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 ANKRD13CQ8N6S4 541 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 PLPPR2Q96GM1 343 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.68□□□□□ -1.5
CKS1B-201ENST00000308987 ALDH8A1Q9H2A2 487 aaPredicted RBP5.68□□□□□ -1.5
CKS1B-201ENST00000308987 CYP8B1Q9UNU6 501 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 LIMCH1Q9UPQ0 1083 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 AGTPBP1Q9UPW5 1226 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 SLC45A1Q9Y2W3 748 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 NR2E3Q9Y5X4 410 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 LRRFIP2Q9Y608 721 aaKnown RBP5.68□□□□□ -1.5
CKS1B-201ENST00000308987 COL11A1P12107 1806 aaPredicted RBP5.68□□□□□ -1.5
CKS1B-201ENST00000308987 PFASO15067 1338 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 CCDC171Q6TFL3 1326 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 MYH8P13535 1937 aa5.68□□□□□ -1.5
CKS1B-201ENST00000308987 PLXNA1Q9UIW2 1896 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 COL2A1P02458 1487 aaPredicted RBP5.67□□□□□ -1.5
CKS1B-201ENST00000308987 GPR75-ASB3A0A0A6YYF3 556 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 FITM1A5D6W6 292 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 TNPO2O14787 897 aaKnown RBP5.67□□□□□ -1.5
CKS1B-201ENST00000308987 CTNND1O60716 968 aaKnown RBP5.67□□□□□ -1.5
CKS1B-201ENST00000308987 CIAO1O76071 339 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 CST3P01034 146 aaPredicted RBP5.67□□□□□ -1.5
CKS1B-201ENST00000308987 CELA3AP09093 270 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 INSRRP14616 1297 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 BMP8BP34820 402 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 BTDP43251 543 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 MAGEA10P43363 369 aaPredicted RBP5.67□□□□□ -1.5
CKS1B-201ENST00000308987 AFF3P51826 1226 aaKnown RBP5.67□□□□□ -1.5
CKS1B-201ENST00000308987 MECOMQ03112 1051 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 PTPN11Q06124 597 aaPredicted RBP5.67□□□□□ -1.5
CKS1B-201ENST00000308987 SPP2Q13103 211 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 PICALMQ13492 652 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 ENOX2Q16206 610 aaKnown RBP5.67□□□□□ -1.5
CKS1B-201ENST00000308987 FAM110CQ1W6H9 321 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 WIPI1Q5MNZ9 446 aaPredicted RBP5.67□□□□□ -1.5
CKS1B-201ENST00000308987 MAP3K21Q5TCX8 1036 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 VPS53Q5VIR6 699 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 PRAMEF13Q5VWM6 474 aa5.67□□□□□ -1.5
CKS1B-201ENST00000308987 SCARA3Q6AZY7 606 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms