RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CCND1P24385 295 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 RWDD4Q6NW29 188 aaKnown RBP14.75□□□□□ -0.05
CSPG4-201ENST00000308508 POTEAQ6S8J7 498 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 CCNYL1Q8N7R7 359 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 PIK3R5Q8WYR1 880 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 CNBD2Q96M20 576 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 TMEM245Q9H330 911 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 MRGBPQ9NV56 204 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 SLC44A4Q53GD3 710 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 NAALADL2Q58DX5 795 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 AGGF1Q8N302 714 aaeCLIP14.75□□□□□ -0.05
CSPG4-201ENST00000308508 STAP2Q9UGK3 403 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 NBNO60934 754 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 SEC24DO94855 1032 aaPredicted RBP14.75□□□□□ -0.05
CSPG4-201ENST00000308508 SLFN12LQ6IEE8 588 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 ABHD8Q96I13 439 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 SLITRK6Q9H5Y7 841 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 ASNSD1Q9NWL6 643 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 ENO4A6NNW6 628 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 ABCE1P61221 599 aaKnown RBP14.75□□□□□ -0.05
CSPG4-201ENST00000308508 LUZP2Q86TE4 346 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 TRADDQ15628 312 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 ABCB5Q2M3G0 1257 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 CEP170P1Q96L14 293 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 MMTAG2Q9BU76 263 aaKnown RBP14.75□□□□□ -0.05
CSPG4-201ENST00000308508 CCDC134Q9H6E4 229 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 ATG3Q9NT62 314 aa14.75□□□□□ -0.05
CSPG4-201ENST00000308508 HMGXB3Q12766 1538 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 TMEM154Q6P9G4 183 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 SPATA21Q7Z572 469 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 ZNF189O75820 626 aaPredicted RBP14.74□□□□□ -0.05
CSPG4-201ENST00000308508 PYGMP11217 842 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 CCND2P30279 289 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 RESP18Q5W5W9 173 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 HDDC2Q7Z4H3 204 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 EAF2Q96CJ1 260 aaPredicted RBP14.74□□□□□ -0.05
CSPG4-201ENST00000308508 GPBP1L1Q9HC44 474 aaPredicted RBP14.74□□□□□ -0.05
CSPG4-201ENST00000308508 DHX34Q14147 1143 aaKnown RBP14.74□□□□□ -0.05
CSPG4-201ENST00000308508 DDX17Q92841 729 aaKnown RBP14.74□□□□□ -0.05
CSPG4-201ENST00000308508 AK9Q5TCS8 1911 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 MEIS1O00470 390 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 MRPS35P82673 323 aaKnown RBP14.74□□□□□ -0.05
CSPG4-201ENST00000308508 ADCK5Q3MIX3 580 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 COG1Q8WTW3 980 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 IL17RAQ96F46 866 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 IFT43Q96FT9 208 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 MXD3Q9BW11 206 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 RPF1Q9H9Y2 349 aaKnown RBP14.74□□□□□ -0.05
CSPG4-201ENST00000308508 LGALS16A8MUM7 142 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 TCP11X1B4DZS4 312 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 E5RI56 91 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 GTF2IP78347 998 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 KIAA1755Q5JYT7 1200 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 SLC13A1Q9BZW2 595 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 FBXO2Q9UK22 296 aaPredicted RBP14.74□□□□□ -0.05
CSPG4-201ENST00000308508 GPS1Q13098 491 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 LBRQ14739 615 aaKnown RBP14.74□□□□□ -0.05
CSPG4-201ENST00000308508 PRMT1Q99873 361 aaKnown RBP14.74□□□□□ -0.05
CSPG4-201ENST00000308508 WNT8AQ9H1J5 351 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 ADAM22Q9P0K1 906 aa14.74□□□□□ -0.05
CSPG4-201ENST00000308508 RPS8P62241 208 aaKnown RBP14.73□□□□□ -0.05
CSPG4-201ENST00000308508 ZMYM1Q5SVZ6 1142 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 CCDC17Q96LX7 622 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 GPATCH8Q9UKJ3 1502 aaKnown RBP14.73□□□□□ -0.05
CSPG4-201ENST00000308508 ANGPT2O15123 496 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 RBBP7Q16576 425 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 GSPT2Q8IYD1 628 aaKnown RBP14.73□□□□□ -0.05
CSPG4-201ENST00000308508 SPATA17Q96L03 361 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 UBE3AQ05086 875 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 POU5F1BQ06416 359 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 RFX8Q6ZV50 586 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 PPM1NQ8N819 430 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 TEKT4Q8WW24 435 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 USP44Q9H0E7 712 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 ZSCAN32Q9NX65 697 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 SLC9A1P19634 815 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 SERPINB3P29508 390 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 KRR1Q13601 381 aaKnown RBP14.73□□□□□ -0.05
CSPG4-201ENST00000308508 ACBD5Q5T8D3 534 aaPredicted RBP14.73□□□□□ -0.05
CSPG4-201ENST00000308508 HMGB3O15347 200 aaKnown RBP14.73□□□□□ -0.05
CSPG4-201ENST00000308508 A1BGP04217 495 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 HSPA2P54652 639 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 MRPS25P82663 173 aaKnown RBP14.73□□□□□ -0.05
CSPG4-201ENST00000308508 PPP6R3Q5H9R7 873 aaPredicted RBP14.73□□□□□ -0.05
CSPG4-201ENST00000308508 NCAPG2Q86XI2 1143 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 EME1Q96AY2 570 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 CEBPAP49715 358 aaPredicted RBP14.73□□□□□ -0.05
CSPG4-201ENST00000308508 MXD4Q14582 209 aaPredicted RBP14.73□□□□□ -0.05
CSPG4-201ENST00000308508 C16orf89Q6UX73 402 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 CMTM5Q96DZ9 223 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 CNOT8Q9UFF9 292 aaKnown RBP14.73□□□□□ -0.05
CSPG4-201ENST00000308508 H0YC42 278 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 ZBTB38Q8NAP3 1195 aaPredicted RBP14.73□□□□□ -0.05
CSPG4-201ENST00000308508 CABLES1Q8TDN4 633 aa14.73□□□□□ -0.05
CSPG4-201ENST00000308508 A0A087WWV3 80 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 BTDP43251 543 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 USP14P54578 494 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 CACNB1Q02641 598 aaPredicted RBP14.72□□□□□ -0.05
CSPG4-201ENST00000308508 DDIASQ8IXT1 998 aa14.72□□□□□ -0.05
CSPG4-201ENST00000308508 CYGBQ8WWM9 190 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms