RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 SUSD4Q5VX71 490 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 WDR93Q6P2C0 686 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 NIM1KQ8IY84 436 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 CDHR1Q96JP9 859 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 ZWILCHQ9H900 591 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 AGPAT5Q9NUQ2 364 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 USP15Q9Y4E8 981 aaPredicted RBP13.72□□□□□ -0.21
COL3A1-201ENST00000304636 SETBP1Q9Y6X0 1596 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 HNRNPH1P31943 449 aaKnown RBP13.72□□□□□ -0.21
COL3A1-201ENST00000304636 FOXO4P98177 505 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 SLFN12LQ6IEE8 588 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 OR6B2Q6IFH4 312 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 GLYCTKQ8IVS8 523 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 USP17L5A8MUK1 530 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 WDR46O15213 610 aaKnown RBP13.72□□□□□ -0.21
COL3A1-201ENST00000304636 NMT2O60551 498 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 MYBL1P10243 752 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 CCND1P24385 295 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 EXOC8Q8IYI6 725 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 PIGOQ8TEQ8 1089 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 SEL1LQ9UBV2 794 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 CD58P19256 250 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 RGS9BPQ6ZS82 235 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 BZW1Q7L1Q6 419 aaKnown RBP13.72□□□□□ -0.21
COL3A1-201ENST00000304636 TEX9Q8N6V9 391 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 DCAF4Q8WV16 495 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 DCP1AQ9NPI6 582 aaPredicted RBP13.72□□□□□ -0.21
COL3A1-201ENST00000304636 PCDHA6Q9UN73 950 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 G3BP2Q9UN86 482 aaKnown RBP13.72□□□□□ -0.21
COL3A1-201ENST00000304636 PCDHA8Q9Y5H6 950 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 ARHGEF40Q8TER5 1519 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 POTEB3A0JP26 581 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 PHF20L1A8MW92 1017 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 POTECB2RU33 542 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 FGFR4P22455 802 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 EEF1DP29692 281 aaKnown RBP13.71□□□□□ -0.21
COL3A1-201ENST00000304636 GCLMP48507 274 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 NCAPHQ15003 741 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 POTEBQ6S5H4 581 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 SYDE1Q6ZW31 735 aaPredicted RBP13.71□□□□□ -0.21
COL3A1-201ENST00000304636 TRMT10CQ7L0Y3 403 aaKnown RBP13.71□□□□□ -0.21
COL3A1-201ENST00000304636 AGGF1Q8N302 714 aaeCLIP13.71□□□□□ -0.21
COL3A1-201ENST00000304636 CDC42BPGQ6DT37 1551 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 ARHGAP10A1A4S6 786 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 ORC4O43929 436 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 KRT14P02533 472 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 FDPSP14324 419 aaKnown RBP13.71□□□□□ -0.21
COL3A1-201ENST00000304636 THOC5Q13769 683 aaKnown RBP13.71□□□□□ -0.21
COL3A1-201ENST00000304636 PTGISQ16647 500 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 ANO5Q75V66 913 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 SMYD3Q9H7B4 428 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 MRPL40Q9NQ50 206 aaKnown RBP13.71□□□□□ -0.21
COL3A1-201ENST00000304636 PI4KBQ9UBF8 816 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 NXF1Q9UBU9 619 aaKnown RBP13.71□□□□□ -0.21
COL3A1-201ENST00000304636 CDC42BPAQ5VT25 1732 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 LPXNO60711 386 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 CCDC22O60826 627 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 LDHAP00338 332 aaKnown RBP13.71□□□□□ -0.21
COL3A1-201ENST00000304636 LRRC31Q6UY01 552 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 IGDCC4Q8TDY8 1250 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 SH3RF3Q8TEJ3 882 aaPredicted RBP13.71□□□□□ -0.21
COL3A1-201ENST00000304636 C7orf25Q9BPX7 421 aa13.71□□□□□ -0.21
COL3A1-201ENST00000304636 PITPNM2Q9BZ72 1349 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 CFAP69A5D8W1 941 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 DIAPH2O60879 1101 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 CALB1P05937 261 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 PEX3P56589 373 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 TFDP2Q14188 446 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 DCLK2Q8N568 766 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 GDF11O95390 407 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 CTDNEP1O95476 244 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 MCF2P10911 925 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 PYGBP11216 843 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 KRT10P13645 584 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 POLD1P28340 1107 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 HOXA13P31271 388 aaPredicted RBP13.71□□□□□ -0.22
COL3A1-201ENST00000304636 CASP2P42575 452 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 ATG9AQ7Z3C6 839 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 ATP11CQ8NB49 1132 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 FAM149B1Q96BN6 582 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 PNKPQ96T60 521 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 IL25Q9H293 177 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 KIAA1586Q9HCI6 787 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 SLC40A1Q9NP59 571 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 NOD1Q9Y239 953 aa13.71□□□□□ -0.22
COL3A1-201ENST00000304636 BBOX1O75936 387 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 CCND2P30279 289 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 VAMP7P51809 220 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 PRELPP51888 382 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 KRT17Q04695 432 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 PDIA5Q14554 519 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 DCAF15Q66K64 600 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 TRPM8Q7Z2W7 1104 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 TMEM35BQ8NCS4 154 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 C3orf20Q8ND61 904 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 NUB1Q9Y5A7 615 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 HECW2Q9P2P5 1572 aa13.7□□□□□ -0.22
COL3A1-201ENST00000304636 XPOTO43592 962 aaKnown RBP13.7□□□□□ -0.22
COL3A1-201ENST00000304636 S100BP04271 92 aaPredicted RBP13.7□□□□□ -0.22
COL3A1-201ENST00000304636 IZUMO3Q5VZ72 239 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms