RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 TTBK2Q6IQ55 1244 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 CCDC197Q8NCU1 140 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 VTI1AQ96AJ9 217 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 NAP1L3Q99457 506 aaPredicted RBP11.24□□□□□ -0.61
SKA1-201ENST00000285116 SLC24A3Q9HC58 644 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 POLLQ9UGP5 575 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 PACSIN2Q9UNF0 486 aaPredicted RBP11.24□□□□□ -0.61
SKA1-201ENST00000285116 NOVA2Q9UNW9 492 aaKnown RBP11.24□□□□□ -0.61
SKA1-201ENST00000285116 CCT8L1PA6NM43 557 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 C6orf229H3BNL8 230 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 DDX3XO00571 662 aaKnown RBP eCLIP11.24□□□□□ -0.612e-9■■■■■ 31.8
SKA1-201ENST00000285116 PPP1R12BO60237 982 aaPredicted RBP11.24□□□□□ -0.61
SKA1-201ENST00000285116 CEP104O60308 925 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 AKAP3O75969 853 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 ECM2O94769 699 aaPredicted RBP11.24□□□□□ -0.61
SKA1-201ENST00000285116 EYA4O95677 639 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 PTENP60484 403 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 ARHGAP4P98171 946 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 GRIK3Q13003 919 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 PPP1R7Q15435 360 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 NAIF1Q69YI7 327 aaPredicted RBP11.24□□□□□ -0.61
SKA1-201ENST00000285116 HIBCHQ6NVY1 386 aaPredicted RBP11.24□□□□□ -0.61
SKA1-201ENST00000285116 PEX26Q7Z412 305 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 SFR1Q86XK3 245 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 RFFLQ8WZ73 363 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 TLCD1Q96CP7 247 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 CHMP6Q96FZ7 201 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 MRIQ9BWK5 157 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 CARD9Q9H257 536 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 DDX4Q9NQI0 724 aaKnown RBP11.24□□□□□ -0.61
SKA1-201ENST00000285116 TBC1D7Q9P0N9 293 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 BAIAP2L1Q9UHR4 511 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 VAV3Q9UKW4 847 aa11.24□□□□□ -0.61
SKA1-201ENST00000285116 POTEFA5A3E0 1075 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 FAM187AA6NFU0 413 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 PHF20L1A8MW92 1017 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 KRT18P05783 430 aaKnown RBP11.23□□□□□ -0.61
SKA1-201ENST00000285116 NUDT17P0C025 328 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 POTEIP0CG38 1075 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 ACTN1P12814 892 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 BRD2P25440 801 aaKnown RBP11.23□□□□□ -0.61
SKA1-201ENST00000285116 GBP1P32455 592 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 STAT1P42224 750 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 MCCD1P59942 119 aaPredicted RBP11.23□□□□□ -0.61
SKA1-201ENST00000285116 POTEGQ6S5H5 508 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 POTEEQ6S8J3 1075 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 ANKS4BQ8N8V4 417 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 UBLCP1Q8WVY7 318 aaPredicted RBP11.23□□□□□ -0.61
SKA1-201ENST00000285116 STK33Q9BYT3 514 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 SEL1LQ9UBV2 794 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 COL2A1P02458 1487 aaPredicted RBP11.23□□□□□ -0.61
SKA1-201ENST00000285116 DNAH12Q6ZR08 3092 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 PIK3CDO00329 1044 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 KRIT1O00522 736 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 HLA-DOAP06340 250 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 MAGOHP61326 146 aaKnown RBP11.23□□□□□ -0.61
SKA1-201ENST00000285116 MYBPC2Q14324 1141 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 CROCCP2Q86T23 111 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 SP8Q8IXZ3 490 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 CCDC63Q8NA47 563 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 GMCL1P1Q8NEA9 526 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 MAGOHBQ96A72 148 aaKnown RBP11.23□□□□□ -0.61
SKA1-201ENST00000285116 PSMD1Q99460 953 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 FAM129AQ9BZQ8 928 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 RAB17Q9H0T7 212 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 TUFT1Q9NNX1 390 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 ZMYM2Q9UBW7 1377 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 RGPD3A6NKT7 1758 aaPredicted RBP11.23□□□□□ -0.61
SKA1-201ENST00000285116 RGPD4Q7Z3J3 1758 aa11.23□□□□□ -0.61
SKA1-201ENST00000285116 CFAP73A6NFT4 308 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 DDX3YO15523 660 aaKnown RBP11.22□□□□□ -0.61
SKA1-201ENST00000285116 HSPA6P17066 643 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 SOX5P35711 763 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 RNASE9P60153 205 aaKnown RBP11.22□□□□□ -0.61
SKA1-201ENST00000285116 DHX34Q14147 1143 aaKnown RBP11.22□□□□□ -0.61
SKA1-201ENST00000285116 ITIH4Q14624 930 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 ACCSLQ4AC99 568 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 ERMARDQ5T6L9 678 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 ARMC2Q8NEN0 867 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 NSMCE1Q8WV22 266 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 TBC1D31Q96DN5 1066 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 XPO6Q96QU8 1125 aaKnown RBP11.22□□□□□ -0.61
SKA1-201ENST00000285116 NEUROG2Q9H2A3 272 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 DMAC2Q9NW81 257 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.22□□□□□ -0.619e-7■■□□□ 13.3
SKA1-201ENST00000285116 KCND2Q9NZV8 630 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 AMFRQ9UKV5 643 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 SLC12A4Q9UP95 1085 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 PCDHA1Q9Y5I3 950 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 BRWD3Q6RI45 1802 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 ZNF536O15090 1300 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 F8VZ95 297 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 BACH1O14867 736 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 ARID5AQ03989 594 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 ATP8B4Q8TF62 1192 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 GMCL1Q96IK5 515 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 TMEM109Q9BVC6 243 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 GCNT4Q9P109 453 aa11.22□□□□□ -0.61
SKA1-201ENST00000285116 AJAP1Q9UKB5 411 aaPredicted RBP11.22□□□□□ -0.61
SKA1-201ENST00000285116 C15orf41Q9Y2V0 281 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms