RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 RNF25Q96BH1 459 aaPredicted RBP16.97■□□□□ 0.31
CTDSP1-201ENST00000273062 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.97■□□□□ 0.31
CTDSP1-201ENST00000273062 E7ENQ6 273 aa16.96■□□□□ 0.31
CTDSP1-201ENST00000273062 CETN3O15182 167 aa16.96■□□□□ 0.31
CTDSP1-201ENST00000273062 CEP104O60308 925 aa16.96■□□□□ 0.31
CTDSP1-201ENST00000273062 SEPT14Q6ZU15 432 aa16.96■□□□□ 0.31
CTDSP1-201ENST00000273062 ENDOVQ8N8Q3 282 aaKnown RBP16.96■□□□□ 0.31
CTDSP1-201ENST00000273062 SH3RF3Q8TEJ3 882 aaPredicted RBP16.96■□□□□ 0.31
CTDSP1-201ENST00000273062 DYNLL2Q96FJ2 89 aa16.96■□□□□ 0.31
CTDSP1-201ENST00000273062 DENND2DQ9H6A0 471 aaPredicted RBP16.96■□□□□ 0.31
CTDSP1-201ENST00000273062 MCM9Q9NXL9 1143 aa16.96■□□□□ 0.31
CTDSP1-201ENST00000273062 CHMP2BQ9UQN3 213 aa16.96■□□□□ 0.31
CTDSP1-201ENST00000273062 GSTA2P09210 222 aa16.96■□□□□ 0.3
CTDSP1-201ENST00000273062 FGRP09769 529 aa16.96■□□□□ 0.3
CTDSP1-201ENST00000273062 EPHB2P29323 1055 aa16.96■□□□□ 0.3
CTDSP1-201ENST00000273062 FUT2Q10981 343 aa16.96■□□□□ 0.3
CTDSP1-201ENST00000273062 TROAPQ12815 778 aa16.96■□□□□ 0.3
CTDSP1-201ENST00000273062 DUS1LQ6P1R4 473 aaKnown RBP16.96■□□□□ 0.3
CTDSP1-201ENST00000273062 SPATA16Q9BXB7 569 aa16.96■□□□□ 0.3
CTDSP1-201ENST00000273062 TXLNGYQ9BZA5 131 aa16.96■□□□□ 0.3
CTDSP1-201ENST00000273062 IQCGQ9H095 443 aaKnown RBP16.96■□□□□ 0.3
CTDSP1-201ENST00000273062 LRCH1Q9Y2L9 728 aa16.96■□□□□ 0.3
CTDSP1-201ENST00000273062 V9GY48 417 aaPredicted RBP16.96■□□□□ 0.3
CTDSP1-201ENST00000273062 ONECUT3O60422 494 aaPredicted RBP16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 PAX3P23760 479 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 PTGDRQ13258 359 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 PABPC4Q13310 644 aaKnown RBP eCLIP16.95■□□□□ 0.31e-12■■■□□ 16.6
CTDSP1-201ENST00000273062 TDRD12Q587J7 1177 aaKnown RBP16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 ECHDC2Q86YB7 292 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 ATP8B4Q8TF62 1192 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 WASF1Q92558 559 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 ERGIC2Q96RQ1 377 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 CRAMP1Q96RY5 1269 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 MMRN2Q9H8L6 949 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 HAO1Q9UJM8 370 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 INTUQ9ULD6 942 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 RGS16O15492 202 aaPredicted RBP16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 HGSNATQ68CP4 663 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 CEP128Q6ZU80 1094 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 OTUD6AQ7L8S5 288 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 HOOK3Q86VS8 718 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 RPGRQ92834 1020 aaKnown RBP16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 DBR1Q9UK59 544 aaKnown RBP16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 SIK3Q9Y2K2 1263 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 ARL2BPQ9Y2Y0 163 aa16.95■□□□□ 0.3
CTDSP1-201ENST00000273062 BAZ2BQ9UIF8 2168 aaKnown RBP16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 TMEM221A6NGB7 291 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 SERPINB2P05120 415 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 VEGFAP15692 232 aaPredicted RBP16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 CBX3Q13185 183 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 ANKRD40Q6AI12 368 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 CATIPQ7Z7H3 387 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 NCSTNQ92542 709 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 GATA6Q92908 595 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 RAB3IPQ96QF0 476 aaPredicted RBP16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 PLIN2Q99541 437 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 PRKAG3Q9UGI9 489 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 TRPC5Q9UL62 973 aaPredicted RBP16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 LDHBP07195 334 aaKnown RBP16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 FIGNQ5HY92 759 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 SOGA3Q5TF21 947 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 TCERG1LQ5VWI1 586 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 FAM114A1Q8IWE2 563 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 SCG3Q8WXD2 468 aaKnown RBP16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 BAP1Q92560 729 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 PGM2Q96G03 612 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 MTA3Q9BTC8 594 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 USP20Q9Y2K6 914 aa16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 NOC2LQ9Y3T9 749 aaKnown RBP16.94■□□□□ 0.3
CTDSP1-201ENST00000273062 ADAMTS3O15072 1205 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 UFL1O94874 794 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 GH1P01241 217 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 LSAMPQ13449 338 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 KHDC1Q4VXA5 237 aaKnown RBP16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 SLC44A5Q8NCS7 719 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 GDAP1Q8TB36 358 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 SNRNP27Q8WVK2 155 aaKnown RBP16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 FMO2Q99518 471 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 MYLK2Q9H1R3 596 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 QTRT2Q9H974 415 aaKnown RBP16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 RMND1Q9NWS8 449 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 SLC29A2Q14542 456 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 NAB2Q15742 525 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 RFWD3Q6PCD5 774 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 AGBL1Q96MI9 1066 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 IWS1Q96ST2 819 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 VCX3BQ9H321 246 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 KIAA1551Q9HCM1 1747 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 VCX3AQ9NNX9 186 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 NLRC4Q9NPP4 1024 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 NR2E1Q9Y466 385 aa16.93■□□□□ 0.3
CTDSP1-201ENST00000273062 MAFGO15525 162 aa16.92■□□□□ 0.3
CTDSP1-201ENST00000273062 SUPT3HO75486 399 aa16.92■□□□□ 0.3
CTDSP1-201ENST00000273062 CYP11B2P19099 503 aa16.92■□□□□ 0.3
CTDSP1-201ENST00000273062 COPB2P35606 906 aa16.92■□□□□ 0.3
CTDSP1-201ENST00000273062 EIF3BP55884 814 aaKnown RBP16.92■□□□□ 0.3
CTDSP1-201ENST00000273062 SNX30Q5VWJ9 437 aa16.92■□□□□ 0.3
CTDSP1-201ENST00000273062 OLFML2BQ68BL8 750 aa16.92■□□□□ 0.3
CTDSP1-201ENST00000273062 SESTD1Q86VW0 696 aa16.92■□□□□ 0.3
CTDSP1-201ENST00000273062 KBTBD2Q8IY47 623 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms