RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 LOC102724159A0A0B4J2E5 919 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 ARHGAP25P42331 645 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 FSTL1Q12841 308 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 MAPK8IP2Q13387 824 aaPredicted RBP16.73■□□□□ 0.27
SF3B4-201ENST00000271628 PWP2Q15269 919 aaKnown RBP16.73■□□□□ 0.27
SF3B4-201ENST00000271628 ZNF569Q5MCW4 686 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 TXLNBQ8N3L3 684 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 EHBP1Q8NDI1 1231 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 IRX2Q9BZI1 471 aaPredicted RBP16.73■□□□□ 0.27
SF3B4-201ENST00000271628 IKZF4Q9H2S9 585 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 TXNRD2Q9NNW7 524 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 GPRC5CQ9NQ84 441 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 SEPT9Q9UHD8 586 aaPredicted RBP16.73■□□□□ 0.27
SF3B4-201ENST00000271628 MYO6Q9UM54 1294 aa16.73■□□□□ 0.27
SF3B4-201ENST00000271628 SYNGAP1Q96PV0 1343 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 MYH9P35579 1960 aaKnown RBP16.72■□□□□ 0.27
SF3B4-201ENST00000271628 SLC16A4O15374 487 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 AKR1B10O60218 316 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 LCA5LO95447 670 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 SERPING1P05155 500 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 PON1P27169 355 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 CYP2J2P51589 502 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 Q3C1V9 767 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 INTS8Q75QN2 995 aaKnown RBP16.72■□□□□ 0.27
SF3B4-201ENST00000271628 SHCBP1Q8NEM2 672 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 TSGA10Q9BZW7 698 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 GANQ9H2C0 597 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 ATP6V0A4Q9HBG4 840 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 PDLIM7Q9NR12 457 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 AIPL1Q9NZN9 384 aa16.72■□□□□ 0.27
SF3B4-201ENST00000271628 IGKV6D-21A0A0A0MT36 114 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 A0A0U1RQJ8 604 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 CCDC169A6NNP5 214 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 H0YCG3 227 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 MAPK13O15264 365 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 KRT13P13646 458 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 NPTX2P47972 431 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 KIF11P52732 1056 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 FKBP1BP68106 108 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 CCDC122Q5T0U0 273 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 KLHDC7AQ5VTJ3 777 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 TMEM161BQ8NDZ6 487 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 ATRIPQ8WXE1 791 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 GOLGA1Q92805 767 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 MMP19Q99542 508 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 KMT5AQ9NQR1 393 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 ARID2Q68CP9 1835 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 UCHL3P15374 230 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 SLC9A1P19634 815 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 SCP2P22307 547 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 UBA1P22314 1058 aaKnown RBP16.71■□□□□ 0.27
SF3B4-201ENST00000271628 GJA5P36382 358 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 EIF4A3P38919 411 aaKnown RBP16.71■□□□□ 0.27
SF3B4-201ENST00000271628 VAV2P52735 878 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 ERVK-9P63128 1117 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 KIF5AQ12840 1032 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 BFSP1Q12934 665 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 XXYLT1Q8NBI6 393 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 JAKMIP2Q96AA8 810 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 IFT74Q96LB3 600 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 TBX20Q9UMR3 447 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 SLC45A1Q9Y2W3 748 aa16.71■□□□□ 0.27
SF3B4-201ENST00000271628 DNAJC25-GNG10A0A024R161 153 aa16.7■□□□□ 0.26
SF3B4-201ENST00000271628 CTAGE9A4FU28 777 aa16.7■□□□□ 0.26
SF3B4-201ENST00000271628 FARP2O94887 1054 aaPredicted RBP16.7■□□□□ 0.26
SF3B4-201ENST00000271628 OATP04181 439 aa16.7■□□□□ 0.26
SF3B4-201ENST00000271628 PLEKP08567 350 aaPredicted RBP16.7■□□□□ 0.26
SF3B4-201ENST00000271628 METTL7BQ6UX53 244 aa16.7■□□□□ 0.26
SF3B4-201ENST00000271628 MAP4K3Q8IVH8 894 aa16.7■□□□□ 0.26
SF3B4-201ENST00000271628 SPAG5Q96R06 1193 aa16.7■□□□□ 0.26
SF3B4-201ENST00000271628 ZNF408Q9H9D4 720 aa16.7■□□□□ 0.26
SF3B4-201ENST00000271628 GCNT4Q9P109 453 aa16.7■□□□□ 0.26
SF3B4-201ENST00000271628 GUCA1BQ9UMX6 200 aa16.7■□□□□ 0.26
SF3B4-201ENST00000271628 DAAM1Q9Y4D1 1078 aa16.7■□□□□ 0.26
SF3B4-201ENST00000271628 BZW2Q9Y6E2 419 aaKnown RBP16.7■□□□□ 0.26
SF3B4-201ENST00000271628 CETPP11597 493 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 FMO5P49326 533 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 GTF2A2P52657 109 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 CCNA1P78396 465 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 TDRD12Q587J7 1177 aaKnown RBP16.69■□□□□ 0.26
SF3B4-201ENST00000271628 FAM160B1Q5W0V3 765 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 MAP1SQ66K74 1059 aaPredicted RBP16.69■□□□□ 0.26
SF3B4-201ENST00000271628 HGSNATQ68CP4 663 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 DPY19L2P1Q6NXN4 242 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 CEP112Q8N8E3 955 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 SEPT1Q8WYJ6 367 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 NIFKQ9BYG3 293 aaKnown RBP16.69■□□□□ 0.26
SF3B4-201ENST00000271628 MLXIPQ9HAP2 919 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 LUC7LQ9NQ29 371 aaKnown RBP16.69■□□□□ 0.26
SF3B4-201ENST00000271628 NRBP2Q9NSY0 501 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 TELO2Q9Y4R8 837 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 DENND3A2RUS2 1198 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 SORBS3O60504 671 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 ABL1P00519 1130 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 PLA2G4AP47712 749 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 CETN1Q12798 172 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 RAPGEF1Q13905 1077 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 ASTE1Q2TB18 679 aaPredicted RBP16.69■□□□□ 0.26
SF3B4-201ENST00000271628 MTERF2Q49AM1 385 aa16.69■□□□□ 0.26
SF3B4-201ENST00000271628 SRGAP1Q7Z6B7 1085 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms