RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 IFT88Q13099 833 aa23.12■■□□□ 1.29
TRIM28-201ENST00000253024 ZNF720Q7Z2F6 126 aa23.12■■□□□ 1.29
TRIM28-201ENST00000253024 SAAL1Q96ER3 474 aa23.12■■□□□ 1.29
TRIM28-201ENST00000253024 TSPYL1Q9H0U9 437 aa23.12■■□□□ 1.29
TRIM28-201ENST00000253024 MYO1FO00160 1098 aa23.12■■□□□ 1.29
TRIM28-201ENST00000253024 MYZAPP0CAP1 466 aa23.12■■□□□ 1.29
TRIM28-201ENST00000253024 JAM2P57087 298 aa23.12■■□□□ 1.29
TRIM28-201ENST00000253024 METTL14Q9HCE5 456 aaKnown RBP23.12■■□□□ 1.29
TRIM28-201ENST00000253024 YDJCA8MPS7 323 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 H0YHG0 523 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 IPO5O00410 1097 aaKnown RBP23.11■■□□□ 1.29
TRIM28-201ENST00000253024 HSPA1LP34931 641 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 STRIP1Q5VSL9 837 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 NLGN1Q8N2Q7 840 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 SCFD2Q8WU76 684 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 C18orf8Q96DM3 657 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 CCDC113Q9H0I3 377 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 GLT8D2Q9H1C3 349 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 CAPN7Q9Y6W3 813 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 KLRG2A4D1S0 409 aaPredicted RBP23.11■■□□□ 1.29
TRIM28-201ENST00000253024 NFIBO00712 420 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 FOSP01100 380 aaPredicted RBP23.11■■□□□ 1.29
TRIM28-201ENST00000253024 PDE6BP35913 854 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 KCNJ1P48048 391 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 ZNF844Q08AG5 666 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 CEP55Q53EZ4 464 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 DAB2IPQ5VWQ8 1189 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 TADA2BQ86TJ2 420 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 CCDC25Q86WR0 208 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 ISCUQ9H1K1 167 aa23.11■■□□□ 1.29
TRIM28-201ENST00000253024 LTBP4Q8N2S1 1624 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 PSMD10O75832 226 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 ERLIN2O94905 339 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 CYP3A4P08684 503 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 MYCLP12524 364 aaPredicted RBP23.1■■□□□ 1.29
TRIM28-201ENST00000253024 MAGOHP61326 146 aaKnown RBP23.1■■□□□ 1.29
TRIM28-201ENST00000253024 PPP3CAQ08209 521 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 PLA2G4FQ68DD2 849 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 MAGOHBQ96A72 148 aaKnown RBP23.1■■□□□ 1.29
TRIM28-201ENST00000253024 RNF14Q9UBS8 474 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 CNOT8Q9UFF9 292 aaKnown RBP23.1■■□□□ 1.29
TRIM28-201ENST00000253024 SHBGP04278 402 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 PRELPP51888 382 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 PPM1KQ8N3J5 372 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 TCRBV7S2A1N4TA0A589 114 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 EIF2AK2P19525 551 aaKnown RBP23.1■■□□□ 1.29
TRIM28-201ENST00000253024 INPP5BP32019 993 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 NPEPPSP55786 919 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 MAP2K1Q02750 393 aaPredicted RBP23.1■■□□□ 1.29
TRIM28-201ENST00000253024 SLC30A5Q8TAD4 765 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 GPR88Q9GZN0 384 aa23.1■■□□□ 1.29
TRIM28-201ENST00000253024 TRPC5Q9UL62 973 aaPredicted RBP23.1■■□□□ 1.29
TRIM28-201ENST00000253024 H0YIN7 160 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 SLC16A4O15374 487 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 FTLP02792 175 aaPredicted RBP23.09■■□□□ 1.29
TRIM28-201ENST00000253024 FERP16591 822 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 ZC3H3Q8IXZ2 948 aaKnown RBP23.09■■□□□ 1.29
TRIM28-201ENST00000253024 DAW1Q8N136 415 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 FIZ1Q96SL8 496 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 FAM118BQ9BPY3 351 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 TOPORSQ9NS56 1045 aaPredicted RBP23.09■■□□□ 1.29
TRIM28-201ENST00000253024 COL20A1Q9P218 1284 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 BZW2Q9Y6E2 419 aaKnown RBP23.09■■□□□ 1.29
TRIM28-201ENST00000253024 ALAS1P13196 640 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 IFI16Q16666 785 aaKnown RBP23.09■■□□□ 1.29
TRIM28-201ENST00000253024 PADI6Q6TGC4 694 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 LDHDQ86WU2 507 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 WHAMMQ8TF30 809 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 GMCL1Q96IK5 515 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 PBKQ96KB5 322 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 IDI2Q9BXS1 227 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 TMEM59LQ9UK28 342 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 SCN9AQ15858 1988 aa23.09■■□□□ 1.29
TRIM28-201ENST00000253024 FOXO6A8MYZ6 492 aa23.08■■□□□ 1.29
TRIM28-201ENST00000253024 ITGB5P18084 799 aa23.08■■□□□ 1.29
TRIM28-201ENST00000253024 LLGL2Q6P1M3 1020 aa23.08■■□□□ 1.29
TRIM28-201ENST00000253024 BORCS6Q96GS4 357 aa23.08■■□□□ 1.29
TRIM28-201ENST00000253024 CCT8L2Q96SF2 557 aa23.08■■□□□ 1.29
TRIM28-201ENST00000253024 PPP1R37O75864 691 aa23.08■■□□□ 1.29
TRIM28-201ENST00000253024 LMBRD2Q68DH5 695 aaPredicted RBP23.08■■□□□ 1.29
TRIM28-201ENST00000253024 RPUSD2Q8IZ73 545 aaKnown RBP23.08■■□□□ 1.29
TRIM28-201ENST00000253024 POLR3CQ9BUI4 534 aaPredicted RBP23.08■■□□□ 1.29
TRIM28-201ENST00000253024 APEX2Q9UBZ4 518 aa23.08■■□□□ 1.29
TRIM28-201ENST00000253024 FZD1Q9UP38 647 aa23.08■■□□□ 1.29
TRIM28-201ENST00000253024 UTP11Q9Y3A2 253 aaKnown RBP23.08■■□□□ 1.29
TRIM28-201ENST00000253024 TBX3O15119 743 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 SGPL1O95470 568 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 PEX3P56589 373 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 ITGB3BPQ13352 177 aaPredicted RBP23.07■■□□□ 1.28
TRIM28-201ENST00000253024 QPCTQ16769 361 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 CCDC38Q502W7 563 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 ZNF473Q8WTR7 871 aaKnown RBP23.07■■□□□ 1.28
TRIM28-201ENST00000253024 DHX38Q92620 1227 aaKnown RBP23.07■■□□□ 1.28
TRIM28-201ENST00000253024 PDGFDQ9GZP0 370 aaPredicted RBP23.07■■□□□ 1.28
TRIM28-201ENST00000253024 CCDC169A6NNP5 214 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 PHF20L1A8MW92 1017 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 MDH1P40925 334 aaKnown RBP23.07■■□□□ 1.28
TRIM28-201ENST00000253024 MIER3Q7Z3K6 550 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 OTUD6BQ8N6M0 293 aa23.07■■□□□ 1.28
TRIM28-201ENST00000253024 PPM1EQ8WY54 764 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms