RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 TMEM63CQ9P1W3 806 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 TMED10P49755 219 aaKnown RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 CTTNQ14247 550 aaKnown RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 MESDQ14696 234 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 LCA5Q86VQ0 697 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 WDR75Q8IWA0 830 aaKnown RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 SUGP1Q8IWZ8 645 aaKnown RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 OR6B3Q8NGW1 331 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 XAB2Q9HCS7 855 aaKnown RBP13.66□□□□□ -0.22
USP40-201ENST00000251722 PSD3Q9NYI0 1048 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 SLC9A2Q9UBY0 812 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 HPCAL4Q9UM19 191 aa13.66□□□□□ -0.22
USP40-201ENST00000251722 SGK1O00141 431 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 CTNND1O60716 968 aaKnown RBP13.65□□□□□ -0.22
USP40-201ENST00000251722 CSF1RP07333 972 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 RFC5P40937 340 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 PDIA5Q14554 519 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 PARP9Q8IXQ6 854 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 USP33Q8TEY7 942 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 NDST4Q9H3R1 872 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 SPTLC3Q9NUV7 552 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 KLHL14Q9P2G3 628 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 GH1P01241 217 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 EPHB1P54762 984 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 MXD4Q14582 209 aaPredicted RBP13.65□□□□□ -0.22
USP40-201ENST00000251722 MAGEB5Q9BZ81 275 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 TUBA8Q9NY65 449 aaPredicted RBP13.65□□□□□ -0.22
USP40-201ENST00000251722 LRRC7Q96NW7 1537 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 SLC15A2Q16348 729 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 ENAHQ8N8S7 591 aaPredicted RBP13.65□□□□□ -0.22
USP40-201ENST00000251722 CCDC197Q8NCU1 140 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 EPSTI1Q96J88 318 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 SMARCAD1Q9H4L7 1026 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 KIF28PB7ZC32 967 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 PCGF5Q86SE9 256 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 KLC4Q9NSK0 619 aa13.65□□□□□ -0.22
USP40-201ENST00000251722 LMNAP02545 664 aaKnown RBP13.64□□□□□ -0.23
USP40-201ENST00000251722 KCNJ6P48051 423 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 BASP1P80723 227 aaKnown RBP13.64□□□□□ -0.23
USP40-201ENST00000251722 NFX1Q12986 1120 aaKnown RBP13.64□□□□□ -0.23
USP40-201ENST00000251722 QRICH1Q2TAL8 776 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 ZNF699Q32M78 642 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 LRRC8AQ8IWT6 810 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 RILPQ96NA2 401 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 CEP72Q9P209 647 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 BAG5Q9UL15 447 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 ZNF711Q9Y462 761 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 UBE4BO95155 1302 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 CPS1P31327 1500 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 MEIS1O00470 390 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 MGEA5O60502 916 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 YWHAGP61981 247 aaKnown RBP eCLIP13.64□□□□□ -0.23
USP40-201ENST00000251722 SGO2Q562F6 1265 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 ANKRD13AQ8IZ07 590 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 MRRFQ96E11 262 aaKnown RBP13.64□□□□□ -0.23
USP40-201ENST00000251722 PCIF1Q9H4Z3 704 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 TRIM66O15016 1216 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 PLEKHA8P1O95397 391 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 ARPP19P56211 112 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 C17orf50Q8WW18 174 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 PGBD1Q96JS3 809 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 ZNF70Q9UC06 446 aaPredicted RBP13.64□□□□□ -0.23
USP40-201ENST00000251722 CYP2D7A0A087X1C5 515 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 SERPINI2O75830 405 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 PDE1BQ01064 536 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 MKRN3Q13064 507 aaKnown RBP13.64□□□□□ -0.23
USP40-201ENST00000251722 NR5A1Q13285 461 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 IQCB1Q15051 598 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 NAALADL2Q58DX5 795 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 MYLK4Q86YV6 388 aaPredicted RBP13.64□□□□□ -0.23
USP40-201ENST00000251722 MAGOHBQ96A72 148 aaKnown RBP13.64□□□□□ -0.23
USP40-201ENST00000251722 NSUN4Q96CB9 384 aaKnown RBP13.64□□□□□ -0.23
USP40-201ENST00000251722 LY9Q9HBG7 655 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 MAD1L1Q9Y6D9 718 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 PIK3C2BO00750 1634 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 STX1BP61266 288 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 ADGRF4Q8IZF3 695 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 OR6J1Q8NGC5 347 aa13.64□□□□□ -0.23
USP40-201ENST00000251722 NEDD4P46934 1319 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 KRT75O95678 551 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 ACTN1P12814 892 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 XKR3Q5GH77 459 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 DARS2Q6PI48 645 aaKnown RBP13.63□□□□□ -0.23
USP40-201ENST00000251722 TBC1D10CQ8IV04 446 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 CCNYQ8ND76 341 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 TNIP3Q96KP6 325 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 NUDCD1Q96RS6 583 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 PARVBQ9HBI1 364 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 DAGLAQ9Y4D2 1042 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 RRN3P2A6NIE6 340 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 AP3B1O00203 1094 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 CLIC2O15247 247 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 MAP3K7O43318 606 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 GAS2O43903 313 aaKnown RBP13.63□□□□□ -0.23
USP40-201ENST00000251722 TJP3O95049 919 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 RALAP11233 206 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 CASP14P31944 242 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 GTF2A2P52657 109 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 NOP14P78316 857 aaKnown RBP13.63□□□□□ -0.23
USP40-201ENST00000251722 ZNF827Q17R98 1081 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms