RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 VIMP08670 466 aaKnown RBP3.44□□□□□ -1.86
SCN1A-219ENST00000641575 RTF1Q92541 710 aaKnown RBP3.44□□□□□ -1.86
SCN1A-219ENST00000641575 TEX35Q5T0J7 233 aa3.43□□□□□ -1.86
SCN1A-219ENST00000641575 TAF7LQ5H9L4 462 aa3.43□□□□□ -1.86
SCN1A-219ENST00000641575 DRC1Q96MC2 740 aa3.43□□□□□ -1.86
SCN1A-219ENST00000641575 WASHC2CQ9Y4E1 1318 aa3.43□□□□□ -1.86
SCN1A-219ENST00000641575 MARCH6O60337 910 aa3.43□□□□□ -1.86
SCN1A-219ENST00000641575 OS9Q13438 667 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-219ENST00000641575 GRIPAP1Q4V328 841 aa3.43□□□□□ -1.86
SCN1A-219ENST00000641575 IRX6P78412 446 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-219ENST00000641575 HMMRO75330 724 aa3.43□□□□□ -1.86
SCN1A-219ENST00000641575 CALD1Q05682 793 aaKnown RBP3.43□□□□□ -1.86
SCN1A-219ENST00000641575 IPO9Q96P70 1041 aaKnown RBP3.43□□□□□ -1.86
SCN1A-219ENST00000641575 MAPK8IP3Q9UPT6 1336 aa3.43□□□□□ -1.86
SCN1A-219ENST00000641575 SUPT16HQ9Y5B9 1047 aaKnown RBP3.43□□□□□ -1.86
SCN1A-219ENST00000641575 ABCA1O95477 2261 aa3.42□□□□□ -1.86
SCN1A-219ENST00000641575 MPDZO75970 2070 aa3.42□□□□□ -1.86
SCN1A-219ENST00000641575 POLEQ07864 2286 aa3.42□□□□□ -1.86
SCN1A-219ENST00000641575 BMS1Q14692 1282 aaKnown RBP3.42□□□□□ -1.86
SCN1A-219ENST00000641575 ARHGEF6Q15052 776 aa3.42□□□□□ -1.86
SCN1A-219ENST00000641575 ANKRD18AQ8IVF6 992 aa3.42□□□□□ -1.86
SCN1A-219ENST00000641575 CCDC47Q96A33 483 aaKnown RBP3.42□□□□□ -1.86
SCN1A-219ENST00000641575 GBP4Q96PP9 640 aa3.42□□□□□ -1.86
SCN1A-219ENST00000641575 DEF6Q9H4E7 631 aa3.42□□□□□ -1.86
SCN1A-219ENST00000641575 DMRT2Q9Y5R5 561 aa3.42□□□□□ -1.86
SCN1A-219ENST00000641575 KCNJ4P48050 445 aa3.42□□□□□ -1.86
SCN1A-219ENST00000641575 MPHOSPH6Q99547 160 aaKnown RBP3.42□□□□□ -1.86
SCN1A-219ENST00000641575 GPS2Q13227 327 aa3.42□□□□□ -1.86
SCN1A-219ENST00000641575 HIVEP3Q5T1R4 2406 aa3.42□□□□□ -1.86
SCN1A-219ENST00000641575 SPAG9O60271 1321 aaKnown RBP3.42□□□□□ -1.86
SCN1A-219ENST00000641575 CWC15Q9P013 229 aaKnown RBP3.42□□□□□ -1.86
SCN1A-219ENST00000641575 CCDC97Q96F63 343 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-219ENST00000641575 FAM9BQ8IZU0 186 aa3.42□□□□□ -1.86
SCN1A-219ENST00000641575 ZBTB24O43167 697 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-219ENST00000641575 COG6Q9Y2V7 657 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 CSB-PGBD3P0DP91 1061 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 RFX1P22670 979 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 AK9Q5TCS8 1911 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 TSR1Q2NL82 804 aaKnown RBP3.41□□□□□ -1.86
SCN1A-219ENST00000641575 SYAP1Q96A49 352 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-219ENST00000641575 POGKQ9P215 609 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 MAPK8IP2Q13387 824 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-219ENST00000641575 FAM161AQ3B820 660 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 UQCRHLA0A096LP55 91 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 CCDC191Q8NCU4 936 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 GORABQ5T7V8 394 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 LRSAM1Q6UWE0 723 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 TCHHQ07283 1943 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 KLHL34Q8N239 644 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 GPATCH3Q96I76 525 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 HOMER2Q9NSB8 354 aa3.41□□□□□ -1.86
SCN1A-219ENST00000641575 CCDC70Q6NSX1 233 aa3.4□□□□□ -1.86
SCN1A-219ENST00000641575 MAP7D2Q96T17 732 aa3.4□□□□□ -1.86
SCN1A-219ENST00000641575 NCOR1O75376 2440 aa3.4□□□□□ -1.86
SCN1A-219ENST00000641575 PHF14O94880 888 aa3.4□□□□□ -1.86
SCN1A-219ENST00000641575 VPS53Q5VIR6 699 aa3.4□□□□□ -1.86
SCN1A-219ENST00000641575 LOC105371045A0A1W2PR82 267 aa3.4□□□□□ -1.87
SCN1A-219ENST00000641575 ARID3CA6NKF2 412 aa3.4□□□□□ -1.87
SCN1A-219ENST00000641575 ZNF526Q8TF50 670 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-219ENST00000641575 CRBNQ96SW2 442 aa3.4□□□□□ -1.87
SCN1A-219ENST00000641575 SEC16AO15027 2179 aa3.4□□□□□ -1.87
SCN1A-219ENST00000641575 NOLC1Q14978 699 aaKnown RBP eCLIP3.4□□□□□ -1.87
SCN1A-219ENST00000641575 RBM33Q96EV2 1170 aaKnown RBP3.4□□□□□ -1.87
SCN1A-219ENST00000641575 TONSLQ96HA7 1378 aa3.4□□□□□ -1.87
SCN1A-219ENST00000641575 CDR1P51861 262 aa3.4□□□□□ -1.87
SCN1A-219ENST00000641575 MYO6Q9UM54 1294 aa3.4□□□□□ -1.87
SCN1A-219ENST00000641575 FTSJ3Q8IY81 847 aaKnown RBP3.39□□□□□ -1.87
SCN1A-219ENST00000641575 TIMELESSQ9UNS1 1208 aa3.39□□□□□ -1.87
SCN1A-219ENST00000641575 TAF3Q5VWG9 929 aa3.39□□□□□ -1.87
SCN1A-219ENST00000641575 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-219ENST00000641575 RASSF8Q8NHQ8 419 aa3.39□□□□□ -1.87
SCN1A-219ENST00000641575 ZNHIT6Q9NWK9 470 aaKnown RBP3.39□□□□□ -1.87
SCN1A-219ENST00000641575 SPTBN2O15020 2390 aa3.39□□□□□ -1.87
SCN1A-219ENST00000641575 PES1O00541 588 aaKnown RBP3.39□□□□□ -1.87
SCN1A-219ENST00000641575 AK7Q96M32 723 aa3.39□□□□□ -1.87
SCN1A-219ENST00000641575 CCDC66A2RUB6 948 aa3.39□□□□□ -1.87
SCN1A-219ENST00000641575 TMC1Q8TDI8 760 aa3.39□□□□□ -1.87
SCN1A-219ENST00000641575 CFAP36Q96G28 342 aa3.39□□□□□ -1.87
SCN1A-219ENST00000641575 PDE4CQ08493 712 aa3.39□□□□□ -1.87
SCN1A-219ENST00000641575 CSPP1Q1MSJ5 1256 aa3.39□□□□□ -1.87
SCN1A-219ENST00000641575 CCDC82Q8N4S0 544 aa3.39□□□□□ -1.87
SCN1A-219ENST00000641575 KNTC1P50748 2209 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 NEXNQ0ZGT2 675 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 LRRC45Q96CN5 670 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 CEP162Q5TB80 1403 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 WNK1Q9H4A3 2382 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 PABPN1LA6NDY0 278 aaKnown RBP3.38□□□□□ -1.87
SCN1A-219ENST00000641575 VPS37DQ86XT2 251 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 CAGE1Q8TC20 777 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 PPM1EQ8WY54 764 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 MRS2Q9HD23 443 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 INCENPQ9NQS7 918 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 PRRC2BQ5JSZ5 2229 aaKnown RBP3.38□□□□□ -1.87
SCN1A-219ENST00000641575 TPM3P06753 285 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 SPTBP11277 2137 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 KIF4AO95239 1232 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 CPLX2Q6PUV4 134 aaKnown RBP3.38□□□□□ -1.87
SCN1A-219ENST00000641575 DYDC1Q8WWB3 177 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 CCDC173Q0VFZ6 552 aa3.38□□□□□ -1.87
SCN1A-219ENST00000641575 HSP90AB3PQ58FF7 597 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms