RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 FBXW7Q969H0 707 aa11.92□□□□□ -0.5
CD44-239ENST00000639002 EPAS1Q99814 870 aa11.92□□□□□ -0.5
CD44-239ENST00000639002 KCNH8Q96L42 1107 aa11.91□□□□□ -0.5
CD44-239ENST00000639002 BHMG1C9JSJ3 638 aaPredicted RBP11.89□□□□□ -0.51
CD44-239ENST00000639002 PRIM1P49642 420 aaKnown RBP11.89□□□□□ -0.51
CD44-239ENST00000639002 C6orf132Q5T0Z8 1188 aa11.89□□□□□ -0.51
CD44-239ENST00000639002 KCNV2Q8TDN2 545 aa11.89□□□□□ -0.51
CD44-239ENST00000639002 RBM33Q96EV2 1170 aaKnown RBP11.88□□□□□ -0.51
CD44-239ENST00000639002 PPP1R3GB7ZBB8 358 aa11.87□□□□□ -0.51
CD44-239ENST00000639002 NBR1Q14596 966 aa11.85□□□□□ -0.51
CD44-239ENST00000639002 PROX2Q3B8N5 592 aa11.85□□□□□ -0.51
CD44-239ENST00000639002 EN1Q05925 392 aaPredicted RBP11.84□□□□□ -0.51
CD44-239ENST00000639002 GRXCR2A6NFK2 248 aa11.83□□□□□ -0.52
CD44-239ENST00000639002 TSR1Q2NL82 804 aaKnown RBP11.83□□□□□ -0.52
CD44-239ENST00000639002 ARHGEF1Q92888 912 aaKnown RBP11.83□□□□□ -0.52
CD44-239ENST00000639002 OSBPP22059 807 aa11.82□□□□□ -0.52
CD44-239ENST00000639002 MAP3K7O43318 606 aa11.78□□□□□ -0.52
CD44-239ENST00000639002 HAP1P54257 671 aaPredicted RBP11.78□□□□□ -0.52
CD44-239ENST00000639002 MLLT3P42568 568 aaPredicted RBP11.77□□□□□ -0.53
CD44-239ENST00000639002 KCTD12Q96CX2 325 aaKnown RBP11.77□□□□□ -0.53
CD44-239ENST00000639002 STAC3Q96MF2 364 aa11.77□□□□□ -0.53
CD44-239ENST00000639002 RABGEF1Q9UJ41 708 aa11.77□□□□□ -0.53
CD44-239ENST00000639002 KDM2AQ9Y2K7 1162 aa11.77□□□□□ -0.53
CD44-239ENST00000639002 KIAA1468Q9P260 1216 aa11.75□□□□□ -0.53
CD44-239ENST00000639002 ONECUT3O60422 494 aaPredicted RBP11.74□□□□□ -0.53
CD44-239ENST00000639002 TRIM6-TRIM34B2RNG4 842 aa11.73□□□□□ -0.53
CD44-239ENST00000639002 MRPL50Q8N5N7 158 aaKnown RBP11.73□□□□□ -0.53
CD44-239ENST00000639002 CDHR5Q9HBB8 845 aa11.73□□□□□ -0.53
CD44-239ENST00000639002 TSKSQ9UJT2 592 aa11.72□□□□□ -0.53
CD44-239ENST00000639002 NBPF3Q9H094 633 aa11.71□□□□□ -0.53
CD44-239ENST00000639002 HCSTQ9UBK5 93 aa11.71□□□□□ -0.53
CD44-239ENST00000639002 FAM198AQ9UFP1 575 aa11.71□□□□□ -0.53
CD44-239ENST00000639002 P3H3Q8IVL6 736 aa11.7□□□□□ -0.54
CD44-239ENST00000639002 NPDC1Q9NQX5 325 aaPredicted RBP11.7□□□□□ -0.54
CD44-239ENST00000639002 C3orf80F5H4A9 247 aa11.68□□□□□ -0.54
CD44-239ENST00000639002 SEMA3EO15041 775 aa11.68□□□□□ -0.54
CD44-239ENST00000639002 PRSS12P56730 875 aa11.67□□□□□ -0.54
CD44-239ENST00000639002 THSD4Q6ZMP0 1018 aa11.67□□□□□ -0.54
CD44-239ENST00000639002 WNT2BQ93097 391 aa11.67□□□□□ -0.54
CD44-239ENST00000639002 CDCA7LQ96GN5 454 aa11.67□□□□□ -0.54
CD44-239ENST00000639002 SEPT9Q9UHD8 586 aaPredicted RBP11.67□□□□□ -0.54
CD44-239ENST00000639002 GOLGA8CPA6NN73 597 aa11.65□□□□□ -0.54
CD44-239ENST00000639002 PTPN5P54829 565 aa11.65□□□□□ -0.54
CD44-239ENST00000639002 LAPTM4BQ86VI4 370 aa11.65□□□□□ -0.54
CD44-239ENST00000639002 CERKQ8TCT0 537 aa11.64□□□□□ -0.55
CD44-239ENST00000639002 ZFRQ96KR1 1074 aaKnown RBP11.63□□□□□ -0.55
CD44-239ENST00000639002 PACS2Q86VP3 889 aa11.62□□□□□ -0.55
CD44-239ENST00000639002 TTC13Q8NBP0 860 aa11.61□□□□□ -0.55
CD44-239ENST00000639002 SMAPO00193 183 aa11.6□□□□□ -0.55
CD44-239ENST00000639002 FAM98CQ17RN3 349 aaKnown RBP11.6□□□□□ -0.55
CD44-239ENST00000639002 VSIG10Q8N0Z9 540 aa11.6□□□□□ -0.55
CD44-239ENST00000639002 TESPA1A2RU30 521 aaPredicted RBP11.59□□□□□ -0.55
CD44-239ENST00000639002 BCAMP50895 628 aa11.59□□□□□ -0.55
CD44-239ENST00000639002 SOWAHBA6NEL2 793 aa11.58□□□□□ -0.56
CD44-239ENST00000639002 ANKK1Q8NFD2 765 aa11.58□□□□□ -0.56
CD44-239ENST00000639002 RBM27Q9P2N5 1060 aaKnown RBP11.58□□□□□ -0.56
CD44-239ENST00000639002 PADI6Q6TGC4 694 aa11.57□□□□□ -0.56
CD44-239ENST00000639002 TATDN2Q93075 761 aa11.57□□□□□ -0.56
CD44-239ENST00000639002 PTGDRQ13258 359 aa11.56□□□□□ -0.56
CD44-239ENST00000639002 PLA2G2EQ9NZK7 142 aa11.55□□□□□ -0.56
CD44-239ENST00000639002 PNMA3Q9UL41 463 aa11.55□□□□□ -0.56
CD44-239ENST00000639002 NUDT18Q6ZVK8 323 aa11.54□□□□□ -0.56
CD44-239ENST00000639002 NUTM2FA1L443 756 aa11.51□□□□□ -0.57
CD44-239ENST00000639002 NBPF26B4DH59 902 aa11.51□□□□□ -0.57
CD44-239ENST00000639002 RBM26Q5T8P6 1007 aaKnown RBP11.51□□□□□ -0.57
CD44-239ENST00000639002 WBP1LQ9NX94 342 aa11.51□□□□□ -0.57
CD44-239ENST00000639002 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.5□□□□□ -0.57
CD44-239ENST00000639002 SAMD7Q7Z3H4 446 aa11.49□□□□□ -0.57
CD44-239ENST00000639002 EYA1Q99502 592 aa11.49□□□□□ -0.57
CD44-239ENST00000639002 LRCH3Q96II8 777 aa11.48□□□□□ -0.57
CD44-239ENST00000639002 TSR3Q9UJK0 312 aaKnown RBP11.46□□□□□ -0.57
CD44-239ENST00000639002 HPS5Q9UPZ3 1129 aa11.46□□□□□ -0.57
CD44-239ENST00000639002 GPR37O15354 613 aa11.44□□□□□ -0.58
CD44-239ENST00000639002 FCHSD2O94868 740 aa11.44□□□□□ -0.58
CD44-239ENST00000639002 FAM161AQ3B820 660 aa11.44□□□□□ -0.58
CD44-239ENST00000639002 SMYD5Q6GMV2 418 aa11.43□□□□□ -0.58
CD44-239ENST00000639002 ADGRG1Q9Y653 693 aa11.43□□□□□ -0.58
CD44-239ENST00000639002 FECHP22830 423 aa11.41□□□□□ -0.58
CD44-239ENST00000639002 IFFO2Q5TF58 517 aa11.41□□□□□ -0.58
CD44-239ENST00000639002 SWT1Q5T5J6 900 aaKnown RBP11.4□□□□□ -0.58
CD44-239ENST00000639002 NYAP1Q6ZVC0 841 aa11.4□□□□□ -0.58
CD44-239ENST00000639002 PPP4CP60510 307 aa11.39□□□□□ -0.59
CD44-239ENST00000639002 ITGBL1O95965 494 aaPredicted RBP11.38□□□□□ -0.59
CD44-239ENST00000639002 HIC1Q14526 733 aa11.38□□□□□ -0.59
CD44-239ENST00000639002 GNPATO15228 680 aa11.34□□□□□ -0.59
CD44-239ENST00000639002 HDGFP51858 240 aaKnown RBP11.34□□□□□ -0.59
CD44-239ENST00000639002 RBM46Q8TBY0 533 aaKnown RBP11.34□□□□□ -0.59
CD44-239ENST00000639002 RCCD1A6NED2 376 aa11.33□□□□□ -0.6
CD44-239ENST00000639002 DNAJB2P25686 324 aa11.33□□□□□ -0.6
CD44-239ENST00000639002 PXYLP1Q8TE99 480 aa11.33□□□□□ -0.6
CD44-239ENST00000639002 RNF40O75150 1001 aa11.32□□□□□ -0.6
CD44-239ENST00000639002 APLP1P51693 650 aa11.32□□□□□ -0.6
CD44-239ENST00000639002 TMEM134Q9H6X4 195 aa11.32□□□□□ -0.6
CD44-239ENST00000639002 A0A0G2JS52 829 aa11.3□□□□□ -0.6
CD44-239ENST00000639002 TJAP1Q5JTD0 557 aa11.3□□□□□ -0.6
CD44-239ENST00000639002 SLF2Q8IX21 1173 aa11.3□□□□□ -0.6
CD44-239ENST00000639002 METTL3Q86U44 580 aaKnown RBP11.29□□□□□ -0.6
CD44-239ENST00000639002 GPIHBP1Q8IV16 184 aa11.29□□□□□ -0.6
CD44-239ENST00000639002 OATP04181 439 aa11.28□□□□□ -0.6
CD44-239ENST00000639002 KCNC4Q03721 635 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms