RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ANKRD30AQ9BXX3 1397 aa28.07■■■□□ 2.08
CLN3-259ENST00000637551 KIF15Q9NS87 1388 aa28.04■■■□□ 2.08
CLN3-259ENST00000637551 NCOA1Q15788 1441 aa28.03■■■□□ 2.08
CLN3-259ENST00000637551 ROCK1Q13464 1354 aa28.02■■■□□ 2.08
CLN3-259ENST00000637551 SETD1BQ9UPS6 1966 aaKnown RBP28.01■■■□□ 2.07
CLN3-259ENST00000637551 MLECQ14165 292 aa28.01■■■□□ 2.07
CLN3-259ENST00000637551 FAM50AQ14320 339 aaKnown RBP28.01■■■□□ 2.07
CLN3-259ENST00000637551 ZC3H13Q5T200 1668 aaKnown RBP28■■■□□ 2.07
CLN3-259ENST00000637551 ESF1Q9H501 851 aaKnown RBP27.99■■■□□ 2.07
CLN3-259ENST00000637551 KDM5DQ9BY66 1539 aa27.98■■■□□ 2.07
CLN3-259ENST00000637551 C3P01024 1663 aa27.97■■■□□ 2.07
CLN3-259ENST00000637551 DEPDC5O75140 1603 aa27.96■■■□□ 2.07
CLN3-259ENST00000637551 PRDM15P57071 1507 aaPredicted RBP27.95■■■□□ 2.06
CLN3-259ENST00000637551 NPATQ14207 1427 aa27.94■■■□□ 2.06
CLN3-259ENST00000637551 KIF3BO15066 747 aa27.94■■■□□ 2.06
CLN3-259ENST00000637551 CLTCQ00610 1675 aaKnown RBP27.94■■■□□ 2.06
CLN3-259ENST00000637551 DMRT2Q9Y5R5 561 aa27.92■■■□□ 2.06
CLN3-259ENST00000637551 MROH1Q8NDA8 1641 aa27.92■■■□□ 2.06
CLN3-259ENST00000637551 PREX1Q8TCU6 1659 aa27.91■■■□□ 2.06
CLN3-259ENST00000637551 STRCQ7RTU9 1775 aa27.89■■■□□ 2.06
CLN3-259ENST00000637551 GGT6Q6P531 493 aa27.89■■■□□ 2.06
CLN3-259ENST00000637551 PTPRKQ15262 1439 aa27.89■■■□□ 2.06
CLN3-259ENST00000637551 ZMYM3Q14202 1370 aa27.87■■■□□ 2.05
CLN3-259ENST00000637551 PPARGC1BQ86YN6 1023 aaKnown RBP27.87■■■□□ 2.05
CLN3-259ENST00000637551 SPATA31D1Q6ZQQ2 1576 aa27.86■■■□□ 2.05
CLN3-259ENST00000637551 ANKRD50Q9ULJ7 1429 aa27.86■■■□□ 2.05
CLN3-259ENST00000637551 RRP7BPQ9NSQ0 103 aa27.86■■■□□ 2.05
CLN3-259ENST00000637551 ABCC3O15438 1527 aa27.85■■■□□ 2.05
CLN3-259ENST00000637551 CEBPAP49715 358 aaPredicted RBP27.84■■■□□ 2.05
CLN3-259ENST00000637551 PZPP20742 1482 aa27.83■■■□□ 2.05
CLN3-259ENST00000637551 VWDEQ8N2E2 1590 aa27.83■■■□□ 2.05
CLN3-259ENST00000637551 CHIC2Q9UKJ5 165 aa27.82■■■□□ 2.04
CLN3-259ENST00000637551 LMTK2Q8IWU2 1503 aa27.82■■■□□ 2.04
CLN3-259ENST00000637551 WASHC2CQ9Y4E1 1318 aa27.81■■■□□ 2.04
CLN3-259ENST00000637551 KANK1Q14678 1352 aa27.79■■■□□ 2.04
CLN3-259ENST00000637551 UNC13BO14795 1591 aa27.78■■■□□ 2.04
CLN3-259ENST00000637551 ARHGAP31Q2M1Z3 1444 aa27.78■■■□□ 2.04
CLN3-259ENST00000637551 UHRF1BP1Q6BDS2 1440 aa27.77■■■□□ 2.04
CLN3-259ENST00000637551 CAMSAP1Q5T5Y3 1602 aa27.77■■■□□ 2.04
CLN3-259ENST00000637551 GCC2Q8IWJ2 1684 aa27.76■■■□□ 2.03
CLN3-259ENST00000637551 ZNF142P52746 1687 aaPredicted RBP27.75■■■□□ 2.03
CLN3-259ENST00000637551 CEP152O94986 1710 aa27.75■■■□□ 2.03
CLN3-259ENST00000637551 PTPRTO14522 1441 aa27.75■■■□□ 2.03
CLN3-259ENST00000637551 HFM1A2PYH4 1435 aa27.71■■■□□ 2.03
CLN3-259ENST00000637551 MYO3AQ8NEV4 1616 aa27.7■■■□□ 2.03
CLN3-259ENST00000637551 LTBP4Q8N2S1 1624 aa27.69■■■□□ 2.02
CLN3-259ENST00000637551 RPRD2Q5VT52 1461 aaKnown RBP27.68■■■□□ 2.02
CLN3-259ENST00000637551 IQGAP3Q86VI3 1631 aa27.67■■■□□ 2.02
CLN3-259ENST00000637551 EFCAB6Q5THR3 1501 aa27.67■■■□□ 2.02
CLN3-259ENST00000637551 TET3O43151 1660 aa27.66■■■□□ 2.02
CLN3-259ENST00000637551 IQSEC2Q5JU85 1478 aa27.66■■■□□ 2.02
CLN3-259ENST00000637551 NLRP1Q9C000 1473 aa27.66■■■□□ 2.02
CLN3-259ENST00000637551 NAIPQ13075 1403 aa27.66■■■□□ 2.02
CLN3-259ENST00000637551 CEP170BQ9Y4F5 1589 aaPredicted RBP27.64■■■□□ 2.01
CLN3-259ENST00000637551 ACIN1Q9UKV3 1341 aaKnown RBP27.64■■■□□ 2.01
CLN3-259ENST00000637551 ERVK-7P63135 1459 aa27.64■■■□□ 2.01
CLN3-259ENST00000637551 TNRQ92752 1358 aa27.62■■■□□ 2.01
CLN3-259ENST00000637551 ITGAEP38570 1179 aa27.62■■■□□ 2.01
CLN3-259ENST00000637551 A2ML1A8K2U0 1454 aa27.61■■■□□ 2.01
CLN3-259ENST00000637551 PLA2R1Q13018 1463 aa27.57■■■□□ 2
CLN3-259ENST00000637551 KDM5AP29375 1690 aaKnown RBP27.56■■■□□ 2
CLN3-259ENST00000637551 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.55■■■□□ 2
CLN3-259ENST00000637551 NOS1P29475 1434 aa27.52■■■□□ 2
CLN3-259ENST00000637551 FBXO31Q5XUX0 539 aaPredicted RBP27.51■■□□□ 1.99
CLN3-259ENST00000637551 NUP155O75694 1391 aa27.49■■□□□ 1.99
CLN3-259ENST00000637551 CFAP65Q6ZU64 1925 aaKnown RBP27.47■■□□□ 1.99
CLN3-259ENST00000637551 E9PCH4 1651 aa27.47■■□□□ 1.99
CLN3-259ENST00000637551 UGGT1Q9NYU2 1555 aa27.47■■□□□ 1.99
CLN3-259ENST00000637551 SYNMO15061 1565 aa27.43■■□□□ 1.98
CLN3-259ENST00000637551 UBR1Q8IWV7 1749 aa27.42■■□□□ 1.98
CLN3-259ENST00000637551 SLC52A1Q9NWF4 448 aa27.42■■□□□ 1.98
CLN3-259ENST00000637551 UBAP1LF5GYI3 381 aa27.41■■□□□ 1.98
CLN3-259ENST00000637551 PKD2Q13563 968 aa27.41■■□□□ 1.98
CLN3-259ENST00000637551 PIK3C2BO00750 1634 aa27.41■■□□□ 1.98
CLN3-259ENST00000637551 THEMISQ8N1K5 641 aaPredicted RBP27.4■■□□□ 1.98
CLN3-259ENST00000637551 POLR1AO95602 1720 aaPredicted RBP27.39■■□□□ 1.98
CLN3-259ENST00000637551 SETD5Q9C0A6 1442 aa27.38■■□□□ 1.97
CLN3-259ENST00000637551 ZNF335Q9H4Z2 1342 aaPredicted RBP27.38■■□□□ 1.97
CLN3-259ENST00000637551 SPHKAPQ2M3C7 1700 aa27.36■■□□□ 1.97
CLN3-259ENST00000637551 SLIT1O75093 1534 aa27.36■■□□□ 1.97
CLN3-259ENST00000637551 ADGRB3O60242 1522 aa27.35■■□□□ 1.97
CLN3-259ENST00000637551 NCKAP5LQ9HCH0 1330 aa27.35■■□□□ 1.97
CLN3-259ENST00000637551 ARHGAP23Q9P227 1491 aa27.33■■□□□ 1.97
CLN3-259ENST00000637551 HRCP23327 699 aa27.33■■□□□ 1.97
CLN3-259ENST00000637551 MED14O60244 1454 aa27.32■■□□□ 1.96
CLN3-259ENST00000637551 TRPM2O94759 1503 aa27.3■■□□□ 1.96
CLN3-259ENST00000637551 NEURL4Q96JN8 1562 aa27.27■■□□□ 1.96
CLN3-259ENST00000637551 IDI1Q13907 227 aa27.27■■□□□ 1.96
CLN3-259ENST00000637551 ANKLE2Q86XL3 938 aa27.26■■□□□ 1.95
CLN3-259ENST00000637551 TMEM131LA2VDJ0 1609 aa27.25■■□□□ 1.95
CLN3-259ENST00000637551 RAB3GAP2Q9H2M9 1393 aa27.23■■□□□ 1.95
CLN3-259ENST00000637551 TMEM2Q9UHN6 1383 aa27.23■■□□□ 1.95
CLN3-259ENST00000637551 TRIM52Q96A61 297 aa27.23■■□□□ 1.95
CLN3-259ENST00000637551 SCAF11Q99590 1463 aaKnown RBP27.23■■□□□ 1.95
CLN3-259ENST00000637551 SLC4A1APQ9BWU0 796 aaKnown RBP27.22■■□□□ 1.95
CLN3-259ENST00000637551 MED1Q15648 1581 aaPredicted RBP27.21■■□□□ 1.95
CLN3-259ENST00000637551 IQGAP1P46940 1657 aa27.2■■□□□ 1.94
CLN3-259ENST00000637551 HSPA1LP34931 641 aa27.19■■□□□ 1.94
CLN3-259ENST00000637551 STAG3Q9UJ98 1225 aa27.19■■□□□ 1.94
CLN3-259ENST00000637551 NPHP4O75161 1426 aaPredicted RBP27.16■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms