RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 FAM135AQ9P2D6 1515 aa26.87■■□□□ 1.89
CLN3-254ENST00000637050 DEPDC5O75140 1603 aa26.86■■□□□ 1.89
CLN3-254ENST00000637050 IQGAP3Q86VI3 1631 aa26.86■■□□□ 1.89
CLN3-254ENST00000637050 DIP2CQ9Y2E4 1556 aa26.85■■□□□ 1.89
CLN3-254ENST00000637050 ANKRD30BQ9BXX2 1392 aa26.83■■□□□ 1.89
CLN3-254ENST00000637050 COL17A1Q9UMD9 1497 aaPredicted RBP26.83■■□□□ 1.88
CLN3-254ENST00000637050 FOXD1Q16676 465 aa26.82■■□□□ 1.88
CLN3-254ENST00000637050 PKD2Q13563 968 aa26.82■■□□□ 1.88
CLN3-254ENST00000637050 YEATS2Q9ULM3 1422 aa26.81■■□□□ 1.88
CLN3-254ENST00000637050 NEUROD1Q13562 356 aa26.8■■□□□ 1.88
CLN3-254ENST00000637050 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.8■■□□□ 1.88
CLN3-254ENST00000637050 KIF3BO15066 747 aa26.79■■□□□ 1.88
CLN3-254ENST00000637050 BCORL1Q5H9F3 1711 aa26.79■■□□□ 1.88
CLN3-254ENST00000637050 TIMELESSQ9UNS1 1208 aa26.79■■□□□ 1.88
CLN3-254ENST00000637050 PRDM15P57071 1507 aaPredicted RBP26.77■■□□□ 1.88
CLN3-254ENST00000637050 MROH1Q8NDA8 1641 aa26.77■■□□□ 1.88
CLN3-254ENST00000637050 VWDEQ8N2E2 1590 aa26.77■■□□□ 1.88
CLN3-254ENST00000637050 TRHP20396 242 aaPredicted RBP26.76■■□□□ 1.87
CLN3-254ENST00000637050 RNF17Q9BXT8 1623 aaKnown RBP26.76■■□□□ 1.87
CLN3-254ENST00000637050 KANK1Q14678 1352 aa26.72■■□□□ 1.87
CLN3-254ENST00000637050 ATP10AO60312 1499 aa26.71■■□□□ 1.87
CLN3-254ENST00000637050 RPRD2Q5VT52 1461 aaKnown RBP26.7■■□□□ 1.86
CLN3-254ENST00000637050 REREQ9P2R6 1566 aa26.69■■□□□ 1.86
CLN3-254ENST00000637050 TONSLQ96HA7 1378 aa26.67■■□□□ 1.86
CLN3-254ENST00000637050 TET3O43151 1660 aa26.67■■□□□ 1.86
CLN3-254ENST00000637050 ARHGEF40Q8TER5 1519 aa26.66■■□□□ 1.86
CLN3-254ENST00000637050 LMTK2Q8IWU2 1503 aa26.64■■□□□ 1.86
CLN3-254ENST00000637050 E9PCH4 1651 aa26.63■■□□□ 1.85
CLN3-254ENST00000637050 AGLP35573 1532 aa26.61■■□□□ 1.85
CLN3-254ENST00000637050 PLA2R1Q13018 1463 aa26.61■■□□□ 1.85
CLN3-254ENST00000637050 GGT6Q6P531 493 aa26.6■■□□□ 1.85
CLN3-254ENST00000637050 PPP1R15AO75807 674 aaPredicted RBP26.58■■□□□ 1.85
CLN3-254ENST00000637050 CEP152O94986 1710 aa26.58■■□□□ 1.85
CLN3-254ENST00000637050 EFCAB6Q5THR3 1501 aa26.58■■□□□ 1.84
CLN3-254ENST00000637050 ABCC3O15438 1527 aa26.55■■□□□ 1.84
CLN3-254ENST00000637050 PTPRTO14522 1441 aa26.53■■□□□ 1.84
CLN3-254ENST00000637050 SIGLEC1Q9BZZ2 1709 aa26.53■■□□□ 1.84
CLN3-254ENST00000637050 CCDC144AA2RUR9 1427 aa26.53■■□□□ 1.84
CLN3-254ENST00000637050 ZC3H13Q5T200 1668 aaKnown RBP26.52■■□□□ 1.84
CLN3-254ENST00000637050 L3MBTL2Q969R5 705 aa26.51■■□□□ 1.83
CLN3-254ENST00000637050 WASHC2CQ9Y4E1 1318 aa26.51■■□□□ 1.83
CLN3-254ENST00000637050 TRPM2O94759 1503 aa26.51■■□□□ 1.83
CLN3-254ENST00000637050 SPHKAPQ2M3C7 1700 aa26.51■■□□□ 1.83
CLN3-254ENST00000637050 CAMSAP1Q5T5Y3 1602 aa26.48■■□□□ 1.83
CLN3-254ENST00000637050 PPP6R1Q9UPN7 881 aa26.46■■□□□ 1.83
CLN3-254ENST00000637050 NPATQ14207 1427 aa26.45■■□□□ 1.83
CLN3-254ENST00000637050 ARHGAP31Q2M1Z3 1444 aa26.43■■□□□ 1.82
CLN3-254ENST00000637050 CLTCL1P53675 1640 aa26.4■■□□□ 1.82
CLN3-254ENST00000637050 CNTLNQ9NXG0 1405 aa26.36■■□□□ 1.81
CLN3-254ENST00000637050 SPATA31E1Q6ZUB1 1445 aa26.36■■□□□ 1.81
CLN3-254ENST00000637050 NOS1P29475 1434 aa26.35■■□□□ 1.81
CLN3-254ENST00000637050 ZNF316A6NFI3 1004 aaPredicted RBP26.34■■□□□ 1.81
CLN3-254ENST00000637050 NEURL4Q96JN8 1562 aa26.32■■□□□ 1.8
CLN3-254ENST00000637050 CLTCQ00610 1675 aaKnown RBP26.32■■□□□ 1.8
CLN3-254ENST00000637050 UGGT1Q9NYU2 1555 aa26.32■■□□□ 1.8
CLN3-254ENST00000637050 MLECQ14165 292 aa26.31■■□□□ 1.8
CLN3-254ENST00000637050 NBPF8Q3BBV2 869 aa26.31■■□□□ 1.8
CLN3-254ENST00000637050 UHRF1BP1Q6BDS2 1440 aa26.31■■□□□ 1.8
CLN3-254ENST00000637050 ARID4BQ4LE39 1312 aaPredicted RBP26.3■■□□□ 1.8
CLN3-254ENST00000637050 RGL3Q3MIN7 710 aa26.28■■□□□ 1.8
CLN3-254ENST00000637050 CFAP65Q6ZU64 1925 aaKnown RBP26.28■■□□□ 1.8
CLN3-254ENST00000637050 DCAF11Q8TEB1 546 aa26.28■■□□□ 1.8
CLN3-254ENST00000637050 SYNMO15061 1565 aa26.28■■□□□ 1.8
CLN3-254ENST00000637050 PREX1Q8TCU6 1659 aa26.27■■□□□ 1.8
CLN3-254ENST00000637050 PIK3C2BO00750 1634 aa26.26■■□□□ 1.79
CLN3-254ENST00000637050 KIF1BO60333 1816 aa26.25■■□□□ 1.79
CLN3-254ENST00000637050 ERVK-7P63135 1459 aa26.23■■□□□ 1.79
CLN3-254ENST00000637050 KDM2AQ9Y2K7 1162 aa26.22■■□□□ 1.79
CLN3-254ENST00000637050 ESF1Q9H501 851 aaKnown RBP26.22■■□□□ 1.79
CLN3-254ENST00000637050 ADGRB3O60242 1522 aa26.21■■□□□ 1.79
CLN3-254ENST00000637050 PRAG1Q86YV5 1406 aa26.19■■□□□ 1.78
CLN3-254ENST00000637050 MROH2AA6NES4 1674 aa26.19■■□□□ 1.78
CLN3-254ENST00000637050 SPATA31D1Q6ZQQ2 1576 aa26.19■■□□□ 1.78
CLN3-254ENST00000637050 ZMYM3Q14202 1370 aa26.19■■□□□ 1.78
CLN3-254ENST00000637050 STAC3Q96MF2 364 aa26.19■■□□□ 1.78
CLN3-254ENST00000637050 SLC52A1Q9NWF4 448 aa26.19■■□□□ 1.78
CLN3-254ENST00000637050 ZNF326Q5BKZ1 582 aaKnown RBP26.18■■□□□ 1.78
CLN3-254ENST00000637050 FBXO31Q5XUX0 539 aaPredicted RBP26.18■■□□□ 1.78
CLN3-254ENST00000637050 RALGAPBQ86X10 1494 aa26.17■■□□□ 1.78
CLN3-254ENST00000637050 IDI1Q13907 227 aa26.14■■□□□ 1.78
CLN3-254ENST00000637050 IFT172Q9UG01 1749 aa26.13■■□□□ 1.77
CLN3-254ENST00000637050 TRPM1Q7Z4N2 1603 aa26.12■■□□□ 1.77
CLN3-254ENST00000637050 MYOM2P54296 1465 aa26.11■■□□□ 1.77
CLN3-254ENST00000637050 MADDQ8WXG6 1647 aa26.11■■□□□ 1.77
CLN3-254ENST00000637050 CHGAP10645 457 aaKnown RBP26.09■■□□□ 1.77
CLN3-254ENST00000637050 FER1L4A9Z1Z3 1794 aa26.09■■□□□ 1.77
CLN3-254ENST00000637050 EIF4G2P78344 907 aaKnown RBP eCLIP26.08■■□□□ 1.771e-9■■■■□ 22.4
CLN3-254ENST00000637050 RPGRIP1LQ68CZ1 1315 aa26.08■■□□□ 1.76
CLN3-254ENST00000637050 TMEM131LA2VDJ0 1609 aa26.08■■□□□ 1.76
CLN3-254ENST00000637050 PPLO60437 1756 aa26.06■■□□□ 1.76
CLN3-254ENST00000637050 HSPA5P11021 654 aaKnown RBP26.06■■□□□ 1.76
CLN3-254ENST00000637050 GPRASP1Q5JY77 1395 aa26.04■■□□□ 1.76
CLN3-254ENST00000637050 NRXN1Q9ULB1 1477 aa26.04■■□□□ 1.76
CLN3-254ENST00000637050 HIRIP3Q9BW71 556 aaPredicted RBP26.03■■□□□ 1.76
CLN3-254ENST00000637050 ROCK2O75116 1388 aaKnown RBP26.03■■□□□ 1.76
CLN3-254ENST00000637050 C3P01024 1663 aa26.02■■□□□ 1.76
CLN3-254ENST00000637050 LAMC1P11047 1609 aa26.01■■□□□ 1.75
CLN3-254ENST00000637050 NEXMIFQ5QGS0 1516 aa26.01■■□□□ 1.75
CLN3-254ENST00000637050 TNRQ92752 1358 aa26.01■■□□□ 1.75
CLN3-254ENST00000637050 CARD11Q9BXL7 1154 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms