RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 REREQ9P2R6 1566 aa15.41■□□□□ 0.06
CLN3-248ENST00000636355 TRIM52Q96A61 297 aa15.4■□□□□ 0.06
CLN3-248ENST00000636355 MPHOSPH9Q99550 1183 aa15.4■□□□□ 0.06
CLN3-248ENST00000636355 DIP2CQ9Y2E4 1556 aa15.4■□□□□ 0.06
CLN3-248ENST00000636355 RPRD2Q5VT52 1461 aaKnown RBP15.4■□□□□ 0.06
CLN3-248ENST00000636355 TSPOAP1O95153 1857 aa15.39■□□□□ 0.05
CLN3-248ENST00000636355 MROH1Q8NDA8 1641 aa15.39■□□□□ 0.05
CLN3-248ENST00000636355 ANKRD30BQ9BXX2 1392 aa15.38■□□□□ 0.05
CLN3-248ENST00000636355 NUP155O75694 1391 aa15.37■□□□□ 0.05
CLN3-248ENST00000636355 A2MP01023 1474 aa15.37■□□□□ 0.05
CLN3-248ENST00000636355 ZC3H13Q5T200 1668 aaKnown RBP15.37■□□□□ 0.05
CLN3-248ENST00000636355 DHX29Q7Z478 1369 aaKnown RBP15.36■□□□□ 0.05
CLN3-248ENST00000636355 ATP10AO60312 1499 aa15.36■□□□□ 0.05
CLN3-248ENST00000636355 SLC4A1APQ9BWU0 796 aaKnown RBP15.36■□□□□ 0.05
CLN3-248ENST00000636355 LMTK2Q8IWU2 1503 aa15.35■□□□□ 0.05
CLN3-248ENST00000636355 AFAP1Q8N556 730 aa15.35■□□□□ 0.05
CLN3-248ENST00000636355 FAM69CQ0P6D2 419 aa15.34■□□□□ 0.05
CLN3-248ENST00000636355 TONSLQ96HA7 1378 aa15.34■□□□□ 0.05
CLN3-248ENST00000636355 ARHGEF40Q8TER5 1519 aa15.33■□□□□ 0.05
CLN3-248ENST00000636355 EFCAB6Q5THR3 1501 aa15.32■□□□□ 0.04
CLN3-248ENST00000636355 E9PCH4 1651 aa15.32■□□□□ 0.04
CLN3-248ENST00000636355 SPHKAPQ2M3C7 1700 aa15.31■□□□□ 0.04
CLN3-248ENST00000636355 KANK1Q14678 1352 aa15.31■□□□□ 0.04
CLN3-248ENST00000636355 NEURL4Q96JN8 1562 aa15.3■□□□□ 0.04
CLN3-248ENST00000636355 TRPM2O94759 1503 aa15.29■□□□□ 0.04
CLN3-248ENST00000636355 AGLP35573 1532 aa15.29■□□□□ 0.04
CLN3-248ENST00000636355 CEP152O94986 1710 aa15.27■□□□□ 0.04
CLN3-248ENST00000636355 PKD2Q13563 968 aa15.27■□□□□ 0.04
CLN3-248ENST00000636355 SIN3AQ96ST3 1273 aa15.25■□□□□ 0.03
CLN3-248ENST00000636355 CAMSAP1Q5T5Y3 1602 aa15.25■□□□□ 0.03
CLN3-248ENST00000636355 CCDC144AA2RUR9 1427 aa15.24■□□□□ 0.03
CLN3-248ENST00000636355 PTPRTO14522 1441 aa15.23■□□□□ 0.03
CLN3-248ENST00000636355 ABCC3O15438 1527 aa15.22■□□□□ 0.03
CLN3-248ENST00000636355 YEATS2Q9ULM3 1422 aa15.22■□□□□ 0.03
CLN3-248ENST00000636355 NEUROD1Q13562 356 aa15.21■□□□□ 0.03
CLN3-248ENST00000636355 PLA2R1Q13018 1463 aa15.2■□□□□ 0.02
CLN3-248ENST00000636355 PPP1R15AO75807 674 aaPredicted RBP15.2■□□□□ 0.02
CLN3-248ENST00000636355 MYT1LQ9UL68 1186 aa15.2■□□□□ 0.02
CLN3-248ENST00000636355 KIF3BO15066 747 aa15.19■□□□□ 0.02
CLN3-248ENST00000636355 RAPGEF3O95398 923 aa15.19■□□□□ 0.02
CLN3-248ENST00000636355 ARHGAP31Q2M1Z3 1444 aa15.18■□□□□ 0.02
CLN3-248ENST00000636355 UHRF1BP1Q6BDS2 1440 aa15.18■□□□□ 0.02
CLN3-248ENST00000636355 KDM4FA0A1W2PPD8 638 aa15.18■□□□□ 0.02
CLN3-248ENST00000636355 CLTCL1P53675 1640 aa15.17■□□□□ 0.02
CLN3-248ENST00000636355 FOXD1Q16676 465 aa15.17■□□□□ 0.02
CLN3-248ENST00000636355 KIF1BO60333 1816 aa15.17■□□□□ 0.02
CLN3-248ENST00000636355 ZNF316A6NFI3 1004 aaPredicted RBP15.16■□□□□ 0.02
CLN3-248ENST00000636355 CNTLNQ9NXG0 1405 aa15.16■□□□□ 0.02
CLN3-248ENST00000636355 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.15■□□□□ 0.02
CLN3-248ENST00000636355 COL17A1Q9UMD9 1497 aaPredicted RBP15.14■□□□□ 0.01
CLN3-248ENST00000636355 PIK3C2BO00750 1634 aa15.14■□□□□ 0.01
CLN3-248ENST00000636355 LAMC1P11047 1609 aa15.14■□□□□ 0.01
CLN3-248ENST00000636355 PPP6R1Q9UPN7 881 aa15.14■□□□□ 0.01
CLN3-248ENST00000636355 RALGAPBQ86X10 1494 aa15.14■□□□□ 0.01
CLN3-248ENST00000636355 POLR1AO95602 1720 aaPredicted RBP15.12■□□□□ 0.01
CLN3-248ENST00000636355 IFT172Q9UG01 1749 aa15.12■□□□□ 0.01
CLN3-248ENST00000636355 NPATQ14207 1427 aa15.12■□□□□ 0.01
CLN3-248ENST00000636355 SPATA31E1Q6ZUB1 1445 aa15.12■□□□□ 0.01
CLN3-248ENST00000636355 SIGLEC1Q9BZZ2 1709 aa15.12■□□□□ 0.01
CLN3-248ENST00000636355 L3MBTL2Q969R5 705 aa15.11■□□□□ 0.01
CLN3-248ENST00000636355 MROH2AA6NES4 1674 aa15.11■□□□□ 0.01
CLN3-248ENST00000636355 PREX1Q8TCU6 1659 aa15.11■□□□□ 0.01
CLN3-248ENST00000636355 ADGRB3O60242 1522 aa15.11■□□□□ 0.01
CLN3-248ENST00000636355 TRPM1Q7Z4N2 1603 aa15.1■□□□□ 0.01
CLN3-248ENST00000636355 STAC3Q96MF2 364 aa15.1■□□□□ 0.01
CLN3-248ENST00000636355 NOS1P29475 1434 aa15.09■□□□□ 0.01
CLN3-248ENST00000636355 KIAA1210Q9ULL0 1709 aa15.09■□□□□ 0.01
CLN3-248ENST00000636355 MYOM2P54296 1465 aa15.08■□□□□ 0
CLN3-248ENST00000636355 MADDQ8WXG6 1647 aa15.07■□□□□ 0
CLN3-248ENST00000636355 SYNMO15061 1565 aa15.07■□□□□ 0
CLN3-248ENST00000636355 CLTCQ00610 1675 aaKnown RBP15.06■□□□□ 0
CLN3-248ENST00000636355 PRAG1Q86YV5 1406 aa15.06■□□□□ 0
CLN3-248ENST00000636355 WASHC2CQ9Y4E1 1318 aa15.05■□□□□ -0
CLN3-248ENST00000636355 SPATA31D1Q6ZQQ2 1576 aa15.04■□□□□ -0
CLN3-248ENST00000636355 PPLO60437 1756 aa15.03■□□□□ -0
CLN3-248ENST00000636355 KDM5AP29375 1690 aaKnown RBP15.03■□□□□ -0
CLN3-248ENST00000636355 GGT6Q6P531 493 aa15.02■□□□□ -0
CLN3-248ENST00000636355 ERVK-7P63135 1459 aa15.01□□□□□ -0.01
CLN3-248ENST00000636355 GPRASP1Q5JY77 1395 aa15.01□□□□□ -0.01
CLN3-248ENST00000636355 UGGT1Q9NYU2 1555 aa15.01□□□□□ -0.01
CLN3-248ENST00000636355 NRXN1Q9ULB1 1477 aa15□□□□□ -0.01
CLN3-248ENST00000636355 CFAP65Q6ZU64 1925 aaKnown RBP14.98□□□□□ -0.01
CLN3-248ENST00000636355 FER1L4A9Z1Z3 1794 aa14.98□□□□□ -0.01
CLN3-248ENST00000636355 IQGAP1P46940 1657 aa14.97□□□□□ -0.01
CLN3-248ENST00000636355 TMEM131LA2VDJ0 1609 aa14.97□□□□□ -0.01
CLN3-248ENST00000636355 NBPF8Q3BBV2 869 aa14.97□□□□□ -0.01
CLN3-248ENST00000636355 EIF4G2P78344 907 aaKnown RBP eCLIP14.96□□□□□ -0.01
CLN3-248ENST00000636355 DIEXFQ68CQ4 756 aaKnown RBP14.96□□□□□ -0.01
CLN3-248ENST00000636355 SETBP1Q9Y6X0 1596 aa14.95□□□□□ -0.02
CLN3-248ENST00000636355 SLC52A1Q9NWF4 448 aa14.95□□□□□ -0.02
CLN3-248ENST00000636355 RPGRIP1LQ68CZ1 1315 aa14.94□□□□□ -0.02
CLN3-248ENST00000636355 NEXMIFQ5QGS0 1516 aa14.94□□□□□ -0.02
CLN3-248ENST00000636355 DCAF11Q8TEB1 546 aa14.94□□□□□ -0.02
CLN3-248ENST00000636355 ZFYVE9O95405 1425 aa14.93□□□□□ -0.02
CLN3-248ENST00000636355 MYO5BQ9ULV0 1848 aa14.93□□□□□ -0.02
CLN3-248ENST00000636355 ROCK2O75116 1388 aaKnown RBP14.93□□□□□ -0.02
CLN3-248ENST00000636355 USP47Q96K76 1375 aa14.93□□□□□ -0.02
CLN3-248ENST00000636355 MYO3AQ8NEV4 1616 aa14.9□□□□□ -0.02
CLN3-248ENST00000636355 PIK3C2GO75747 1445 aa14.9□□□□□ -0.02
CLN3-248ENST00000636355 C3P01024 1663 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms