RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 KCNC4Q03721 635 aa3.91□□□□□ -1.78
SMARCB1-209ENST00000635578 DDX27Q96GQ7 796 aaKnown RBP3.91□□□□□ -1.78
SMARCB1-209ENST00000635578 ZFRQ96KR1 1074 aaKnown RBP3.91□□□□□ -1.78
SMARCB1-209ENST00000635578 RYDENQ9NUL5 291 aaKnown RBP3.91□□□□□ -1.78
SMARCB1-209ENST00000635578 EMILIN3Q9NT22 766 aa3.9□□□□□ -1.79
SMARCB1-209ENST00000635578 TYW1BQ6NUM6 668 aa3.89□□□□□ -1.79
SMARCB1-209ENST00000635578 RBM33Q96EV2 1170 aaKnown RBP3.89□□□□□ -1.79
SMARCB1-209ENST00000635578 HPS5Q9UPZ3 1129 aa3.89□□□□□ -1.79
SMARCB1-209ENST00000635578 LCE2BO14633 110 aa3.88□□□□□ -1.79
SMARCB1-209ENST00000635578 GFRA3O60609 400 aa3.88□□□□□ -1.79
SMARCB1-209ENST00000635578 NYAP1Q6ZVC0 841 aa3.88□□□□□ -1.79
SMARCB1-209ENST00000635578 LAPTM4BQ86VI4 370 aa3.88□□□□□ -1.79
SMARCB1-209ENST00000635578 FBXW7Q969H0 707 aa3.88□□□□□ -1.79
SMARCB1-209ENST00000635578 LRCH3Q96II8 777 aa3.88□□□□□ -1.79
SMARCB1-209ENST00000635578 PHF14O94880 888 aa3.87□□□□□ -1.79
SMARCB1-209ENST00000635578 C6orf132Q5T0Z8 1188 aa3.87□□□□□ -1.79
SMARCB1-209ENST00000635578 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.87□□□□□ -1.79
SMARCB1-209ENST00000635578 TSR3Q9UJK0 312 aaKnown RBP3.87□□□□□ -1.79
SMARCB1-209ENST00000635578 TRIM6-TRIM34B2RNG4 842 aa3.86□□□□□ -1.79
SMARCB1-209ENST00000635578 GTPBP6O43824 516 aaPredicted RBP3.86□□□□□ -1.79
SMARCB1-209ENST00000635578 MFSD10Q14728 455 aa3.86□□□□□ -1.79
SMARCB1-209ENST00000635578 FAM98CQ17RN3 349 aaKnown RBP3.86□□□□□ -1.79
SMARCB1-209ENST00000635578 TRAF7Q6Q0C0 670 aa3.86□□□□□ -1.79
SMARCB1-209ENST00000635578 DNAJC5Q9H3Z4 198 aa3.86□□□□□ -1.79
SMARCB1-209ENST00000635578 DPYSL4O14531 572 aa3.85□□□□□ -1.79
SMARCB1-209ENST00000635578 LAPTM4AQ15012 233 aa3.85□□□□□ -1.79
SMARCB1-209ENST00000635578 CADPS2Q86UW7 1296 aa3.85□□□□□ -1.79
SMARCB1-209ENST00000635578 DDX12PQ92771 950 aa3.85□□□□□ -1.79
SMARCB1-209ENST00000635578 PRKD2Q9BZL6 878 aa3.85□□□□□ -1.79
SMARCB1-209ENST00000635578 DCAF8L2P0C7V8 631 aa3.84□□□□□ -1.79
SMARCB1-209ENST00000635578 PPP4CP60510 307 aa3.84□□□□□ -1.79
SMARCB1-209ENST00000635578 EPAS1Q99814 870 aa3.84□□□□□ -1.79
SMARCB1-209ENST00000635578 SMAPO00193 183 aa3.83□□□□□ -1.8
SMARCB1-209ENST00000635578 MAP3K7O43318 606 aa3.83□□□□□ -1.8
SMARCB1-209ENST00000635578 ONECUT3O60422 494 aaPredicted RBP3.83□□□□□ -1.8
SMARCB1-209ENST00000635578 RNF40O75150 1001 aa3.83□□□□□ -1.8
SMARCB1-209ENST00000635578 PACS2Q86VP3 889 aa3.83□□□□□ -1.8
SMARCB1-209ENST00000635578 NRG2O14511 850 aaPredicted RBP3.82□□□□□ -1.8
SMARCB1-209ENST00000635578 NBR1Q14596 966 aa3.82□□□□□ -1.8
SMARCB1-209ENST00000635578 TSR1Q2NL82 804 aaKnown RBP3.82□□□□□ -1.8
SMARCB1-209ENST00000635578 TJAP1Q5JTD0 557 aa3.82□□□□□ -1.8
SMARCB1-209ENST00000635578 SAMD7Q7Z3H4 446 aa3.82□□□□□ -1.8
SMARCB1-209ENST00000635578 MTRQ99707 1265 aa3.82□□□□□ -1.8
SMARCB1-209ENST00000635578 TSKSQ9UJT2 592 aa3.82□□□□□ -1.8
SMARCB1-209ENST00000635578 PPP1R18Q6NYC8 613 aa3.81□□□□□ -1.8
SMARCB1-209ENST00000635578 PDZRN3Q9UPQ7 1066 aa3.81□□□□□ -1.8
SMARCB1-209ENST00000635578 ZNF787Q6DD87 383 aa3.8□□□□□ -1.8
SMARCB1-209ENST00000635578 ZNF516Q92618 1163 aa3.8□□□□□ -1.8
SMARCB1-209ENST00000635578 C3orf80F5H4A9 247 aa3.79□□□□□ -1.8
SMARCB1-209ENST00000635578 EN1Q05925 392 aaPredicted RBP3.79□□□□□ -1.8
SMARCB1-209ENST00000635578 NKX2-3Q8TAU0 364 aa3.79□□□□□ -1.8
SMARCB1-209ENST00000635578 CDCA7LQ96GN5 454 aa3.79□□□□□ -1.8
SMARCB1-209ENST00000635578 IL21Q9HBE4 155 aa3.79□□□□□ -1.8
SMARCB1-209ENST00000635578 V9GY48 417 aaPredicted RBP3.79□□□□□ -1.8
SMARCB1-209ENST00000635578 COPS2P61201 443 aa3.78□□□□□ -1.8
SMARCB1-209ENST00000635578 CAMK2BQ13554 666 aa3.78□□□□□ -1.8
SMARCB1-209ENST00000635578 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.78□□□□□ -1.8
SMARCB1-209ENST00000635578 FAM198AQ9UFP1 575 aa3.78□□□□□ -1.8
SMARCB1-209ENST00000635578 NBPF26B4DH59 902 aa3.77□□□□□ -1.81
SMARCB1-209ENST00000635578 APLP1P51693 650 aa3.77□□□□□ -1.81
SMARCB1-209ENST00000635578 PRSS12P56730 875 aa3.77□□□□□ -1.81
SMARCB1-209ENST00000635578 ZNF775Q96BV0 537 aaPredicted RBP3.77□□□□□ -1.81
SMARCB1-209ENST00000635578 PNMA3Q9UL41 463 aa3.77□□□□□ -1.81
SMARCB1-209ENST00000635578 GRXCR2A6NFK2 248 aa3.76□□□□□ -1.81
SMARCB1-209ENST00000635578 PRIM1P49642 420 aaKnown RBP3.76□□□□□ -1.81
SMARCB1-209ENST00000635578 TATDN2Q93075 761 aa3.76□□□□□ -1.81
SMARCB1-209ENST00000635578 GGCXP38435 758 aa3.75□□□□□ -1.81
SMARCB1-209ENST00000635578 HDGFP51858 240 aaKnown RBP3.75□□□□□ -1.81
SMARCB1-209ENST00000635578 PDIA6Q15084 440 aa3.75□□□□□ -1.81
SMARCB1-209ENST00000635578 NUDT18Q6ZVK8 323 aa3.75□□□□□ -1.81
SMARCB1-209ENST00000635578 CDHR5Q9HBB8 845 aa3.75□□□□□ -1.81
SMARCB1-209ENST00000635578 PKDCCQ504Y2 493 aa3.73□□□□□ -1.81
SMARCB1-209ENST00000635578 SWT1Q5T5J6 900 aaKnown RBP3.73□□□□□ -1.81
SMARCB1-209ENST00000635578 SPDYE16A6NNV3 312 aaPredicted RBP3.72□□□□□ -1.81
SMARCB1-209ENST00000635578 POTECB2RU33 542 aa3.72□□□□□ -1.81
SMARCB1-209ENST00000635578 SLC19A1P41440 591 aa3.72□□□□□ -1.81
SMARCB1-209ENST00000635578 TRIM67Q6ZTA4 783 aa3.72□□□□□ -1.81
SMARCB1-209ENST00000635578 CERKQ8TCT0 537 aa3.72□□□□□ -1.81
SMARCB1-209ENST00000635578 RNF223E7ERA6 249 aa3.71□□□□□ -1.82
SMARCB1-209ENST00000635578 TNFRSF10AO00220 468 aa3.71□□□□□ -1.82
SMARCB1-209ENST00000635578 TLL1O43897 1013 aa3.71□□□□□ -1.82
SMARCB1-209ENST00000635578 ZPR1O75312 459 aa3.71□□□□□ -1.82
SMARCB1-209ENST00000635578 SLC4A3P48751 1232 aa3.71□□□□□ -1.82
SMARCB1-209ENST00000635578 MYT1Q01538 1121 aa3.71□□□□□ -1.82
SMARCB1-209ENST00000635578 PADI6Q6TGC4 694 aa3.71□□□□□ -1.82
SMARCB1-209ENST00000635578 SLF2Q8IX21 1173 aa3.71□□□□□ -1.82
SMARCB1-209ENST00000635578 FAM187AA6NFU0 413 aa3.7□□□□□ -1.82
SMARCB1-209ENST00000635578 BLOC1S3Q6QNY0 202 aa3.7□□□□□ -1.82
SMARCB1-209ENST00000635578 NECTIN2Q92692 538 aa3.7□□□□□ -1.82
SMARCB1-209ENST00000635578 EMID1Q96A84 441 aaPredicted RBP3.7□□□□□ -1.82
SMARCB1-209ENST00000635578 TMUB1Q9BVT8 246 aa3.7□□□□□ -1.82
SMARCB1-209ENST00000635578 PCDHB3Q9Y5E6 796 aa3.7□□□□□ -1.82
SMARCB1-209ENST00000635578 PPEF1O14829 653 aaPredicted RBP3.69□□□□□ -1.82
SMARCB1-209ENST00000635578 ST8SIA5O15466 376 aa3.69□□□□□ -1.82
SMARCB1-209ENST00000635578 DGAT1O75907 488 aa3.69□□□□□ -1.82
SMARCB1-209ENST00000635578 S1PR4O95977 384 aa3.69□□□□□ -1.82
SMARCB1-209ENST00000635578 OSBPP22059 807 aa3.69□□□□□ -1.82
SMARCB1-209ENST00000635578 E2F4Q16254 413 aa3.69□□□□□ -1.82
SMARCB1-209ENST00000635578 ZNF697Q5TEC3 545 aa3.68□□□□□ -1.82
SMARCB1-209ENST00000635578 SPRYD7Q5W111 196 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms