RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SHANK2Q9UPX8 1470 aa27.64■■■□□ 2.02
CLN3-239ENST00000628023 STRCQ7RTU9 1775 aa27.64■■■□□ 2.02
CLN3-239ENST00000628023 PTPRTO14522 1441 aa27.59■■■□□ 2.01
CLN3-239ENST00000628023 CLTCQ00610 1675 aaKnown RBP27.59■■■□□ 2.01
CLN3-239ENST00000628023 RRBP1Q9P2E9 1410 aaKnown RBP27.58■■■□□ 2.01
CLN3-239ENST00000628023 DHX29Q7Z478 1369 aaKnown RBP27.58■■■□□ 2.01
CLN3-239ENST00000628023 CHIC2Q9UKJ5 165 aa27.56■■■□□ 2
CLN3-239ENST00000628023 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.56■■■□□ 2
CLN3-239ENST00000628023 ITGAEP38570 1179 aa27.55■■■□□ 2
CLN3-239ENST00000628023 NCOA1Q15788 1441 aa27.53■■■□□ 2
CLN3-239ENST00000628023 ANKRD30AQ9BXX3 1397 aa27.52■■■□□ 2
CLN3-239ENST00000628023 KIF3BO15066 747 aa27.52■■■□□ 2
CLN3-239ENST00000628023 PTPRKQ15262 1439 aa27.51■■□□□ 1.99
CLN3-239ENST00000628023 KIF15Q9NS87 1388 aa27.51■■□□□ 1.99
CLN3-239ENST00000628023 RRP7BPQ9NSQ0 103 aa27.5■■□□□ 1.99
CLN3-239ENST00000628023 CAMSAP1Q5T5Y3 1602 aa27.49■■□□□ 1.99
CLN3-239ENST00000628023 DUOX2Q9NRD8 1548 aa27.47■■□□□ 1.99
CLN3-239ENST00000628023 ADGRL2O95490 1459 aa27.47■■□□□ 1.99
CLN3-239ENST00000628023 PKD2Q13563 968 aa27.44■■□□□ 1.98
CLN3-239ENST00000628023 MYO3AQ8NEV4 1616 aa27.44■■□□□ 1.98
CLN3-239ENST00000628023 WASHC2CQ9Y4E1 1318 aa27.43■■□□□ 1.98
CLN3-239ENST00000628023 NCKAP5LQ9HCH0 1330 aa27.42■■□□□ 1.98
CLN3-239ENST00000628023 CEP170BQ9Y4F5 1589 aaPredicted RBP27.42■■□□□ 1.98
CLN3-239ENST00000628023 ZNF142P52746 1687 aaPredicted RBP27.42■■□□□ 1.98
CLN3-239ENST00000628023 FAM135AQ9P2D6 1515 aa27.41■■□□□ 1.98
CLN3-239ENST00000628023 PLA2R1Q13018 1463 aa27.4■■□□□ 1.98
CLN3-239ENST00000628023 ERBINQ96RT1 1412 aa27.4■■□□□ 1.98
CLN3-239ENST00000628023 EIF2AK4Q9P2K8 1649 aaKnown RBP27.39■■□□□ 1.98
CLN3-239ENST00000628023 KDM5DQ9BY66 1539 aa27.39■■□□□ 1.98
CLN3-239ENST00000628023 ROCK1Q13464 1354 aa27.38■■□□□ 1.97
CLN3-239ENST00000628023 A2ML1A8K2U0 1454 aa27.36■■□□□ 1.97
CLN3-239ENST00000628023 TNRQ92752 1358 aa27.35■■□□□ 1.97
CLN3-239ENST00000628023 FBXO31Q5XUX0 539 aaPredicted RBP27.35■■□□□ 1.97
CLN3-239ENST00000628023 PZPP20742 1482 aa27.34■■□□□ 1.97
CLN3-239ENST00000628023 LTBP4Q8N2S1 1624 aa27.34■■□□□ 1.97
CLN3-239ENST00000628023 RNF17Q9BXT8 1623 aaKnown RBP27.32■■□□□ 1.96
CLN3-239ENST00000628023 ANKRD50Q9ULJ7 1429 aa27.32■■□□□ 1.96
CLN3-239ENST00000628023 IQSEC2Q5JU85 1478 aa27.32■■□□□ 1.96
CLN3-239ENST00000628023 ZNF335Q9H4Z2 1342 aaPredicted RBP27.27■■□□□ 1.96
CLN3-239ENST00000628023 THEMISQ8N1K5 641 aaPredicted RBP27.26■■□□□ 1.95
CLN3-239ENST00000628023 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.25■■□□□ 1.95
CLN3-239ENST00000628023 NLRP1Q9C000 1473 aa27.23■■□□□ 1.95
CLN3-239ENST00000628023 MROH1Q8NDA8 1641 aa27.23■■□□□ 1.95
CLN3-239ENST00000628023 KANK1Q14678 1352 aa27.22■■□□□ 1.95
CLN3-239ENST00000628023 PRDM15P57071 1507 aaPredicted RBP27.22■■□□□ 1.95
CLN3-239ENST00000628023 ANKLE2Q86XL3 938 aa27.22■■□□□ 1.95
CLN3-239ENST00000628023 DEPDC5O75140 1603 aa27.21■■□□□ 1.95
CLN3-239ENST00000628023 ZC3H13Q5T200 1668 aaKnown RBP27.2■■□□□ 1.94
CLN3-239ENST00000628023 ABCC3O15438 1527 aa27.19■■□□□ 1.94
CLN3-239ENST00000628023 GCC2Q8IWJ2 1684 aa27.18■■□□□ 1.94
CLN3-239ENST00000628023 HFM1A2PYH4 1435 aa27.17■■□□□ 1.94
CLN3-239ENST00000628023 NAIPQ13075 1403 aa27.17■■□□□ 1.94
CLN3-239ENST00000628023 UGGT1Q9NYU2 1555 aa27.16■■□□□ 1.94
CLN3-239ENST00000628023 CEP152O94986 1710 aa27.16■■□□□ 1.94
CLN3-239ENST00000628023 POLR1AO95602 1720 aaPredicted RBP27.16■■□□□ 1.94
CLN3-239ENST00000628023 UBAP1LF5GYI3 381 aa27.15■■□□□ 1.94
CLN3-239ENST00000628023 UNC13BO14795 1591 aa27.13■■□□□ 1.93
CLN3-239ENST00000628023 SPATA31D1Q6ZQQ2 1576 aa27.1■■□□□ 1.93
CLN3-239ENST00000628023 ERVK-7P63135 1459 aa27.09■■□□□ 1.93
CLN3-239ENST00000628023 VWDEQ8N2E2 1590 aa27.09■■□□□ 1.93
CLN3-239ENST00000628023 NEURL4Q96JN8 1562 aa27.09■■□□□ 1.93
CLN3-239ENST00000628023 DISP3Q9P2K9 1392 aa27.09■■□□□ 1.93
CLN3-239ENST00000628023 NUP155O75694 1391 aa27.06■■□□□ 1.92
CLN3-239ENST00000628023 NPHP4O75161 1426 aaPredicted RBP27.06■■□□□ 1.92
CLN3-239ENST00000628023 CPS1P31327 1500 aa27.06■■□□□ 1.92
CLN3-239ENST00000628023 LMTK2Q8IWU2 1503 aa27.06■■□□□ 1.92
CLN3-239ENST00000628023 CFAP65Q6ZU64 1925 aaKnown RBP27.04■■□□□ 1.92
CLN3-239ENST00000628023 MED14O60244 1454 aa27.04■■□□□ 1.92
CLN3-239ENST00000628023 ARHGAP31Q2M1Z3 1444 aa27.02■■□□□ 1.92
CLN3-239ENST00000628023 IQGAP3Q86VI3 1631 aa27.01■■□□□ 1.92
CLN3-239ENST00000628023 EFCAB6Q5THR3 1501 aa27.01■■□□□ 1.91
CLN3-239ENST00000628023 TOM1O60784 492 aa27.01■■□□□ 1.91
CLN3-239ENST00000628023 TRIM52Q96A61 297 aa27■■□□□ 1.91
CLN3-239ENST00000628023 SETD5Q9C0A6 1442 aa26.99■■□□□ 1.91
CLN3-239ENST00000628023 TET3O43151 1660 aa26.99■■□□□ 1.91
CLN3-239ENST00000628023 IQGAP1P46940 1657 aa26.97■■□□□ 1.91
CLN3-239ENST00000628023 SCAF1Q9H7N4 1312 aaKnown RBP26.96■■□□□ 1.91
CLN3-239ENST00000628023 STAG3Q9UJ98 1225 aa26.94■■□□□ 1.9
CLN3-239ENST00000628023 EID1Q9Y6B2 187 aa26.94■■□□□ 1.9
CLN3-239ENST00000628023 PIP4K2BP78356 416 aa26.93■■□□□ 1.9
CLN3-239ENST00000628023 UBR1Q8IWV7 1749 aa26.93■■□□□ 1.9
CLN3-239ENST00000628023 TXNDC2Q86VQ3 553 aa26.92■■□□□ 1.9
CLN3-239ENST00000628023 RPRD2Q5VT52 1461 aaKnown RBP26.92■■□□□ 1.9
CLN3-239ENST00000628023 RAB3GAP2Q9H2M9 1393 aa26.91■■□□□ 1.9
CLN3-239ENST00000628023 SCAF11Q99590 1463 aaKnown RBP26.91■■□□□ 1.9
CLN3-239ENST00000628023 TRIM26Q12899 539 aaPredicted RBP26.88■■□□□ 1.89
CLN3-239ENST00000628023 ACIN1Q9UKV3 1341 aaKnown RBP26.88■■□□□ 1.89
CLN3-239ENST00000628023 E9PCH4 1651 aa26.87■■□□□ 1.89
CLN3-239ENST00000628023 SLIT1O75093 1534 aa26.86■■□□□ 1.89
CLN3-239ENST00000628023 LTKP29376 864 aa26.86■■□□□ 1.89
CLN3-239ENST00000628023 SLC4A1APQ9BWU0 796 aaKnown RBP26.85■■□□□ 1.89
CLN3-239ENST00000628023 ARHGAP23Q9P227 1491 aa26.85■■□□□ 1.89
CLN3-239ENST00000628023 ILDR2Q71H61 639 aa26.84■■□□□ 1.89
CLN3-239ENST00000628023 NOS1P29475 1434 aa26.83■■□□□ 1.89
CLN3-239ENST00000628023 IDI1Q13907 227 aa26.83■■□□□ 1.89
CLN3-239ENST00000628023 PIK3C2BO00750 1634 aa26.82■■□□□ 1.88
CLN3-239ENST00000628023 TMEM2Q9UHN6 1383 aa26.82■■□□□ 1.88
CLN3-239ENST00000628023 SYNMO15061 1565 aa26.81■■□□□ 1.88
CLN3-239ENST00000628023 HSPA1LP34931 641 aa26.81■■□□□ 1.88
CLN3-239ENST00000628023 SLC52A1Q9NWF4 448 aa26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 143.3 ms