RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 KANK1Q14678 1352 aa23.07■■□□□ 1.28
LDB3-208ENST00000623007 KDM5CP41229 1560 aa23.06■■□□□ 1.28
LDB3-208ENST00000623007 DHX29Q7Z478 1369 aaKnown RBP23.05■■□□□ 1.28
LDB3-208ENST00000623007 MLH3Q9UHC1 1453 aa23.04■■□□□ 1.28
LDB3-208ENST00000623007 POGZQ7Z3K3 1410 aa23.03■■□□□ 1.28
LDB3-208ENST00000623007 MAP3K4Q9Y6R4 1608 aa23.01■■□□□ 1.27
LDB3-208ENST00000623007 CYB5RLQ6IPT4 315 aa23.01■■□□□ 1.27
LDB3-208ENST00000623007 PRDM15P57071 1507 aaPredicted RBP22.99■■□□□ 1.27
LDB3-208ENST00000623007 KIDINS220Q9ULH0 1771 aa22.99■■□□□ 1.27
LDB3-208ENST00000623007 TET3O43151 1660 aa22.99■■□□□ 1.27
LDB3-208ENST00000623007 HECW2Q9P2P5 1572 aa22.99■■□□□ 1.27
LDB3-208ENST00000623007 VWDEQ8N2E2 1590 aa22.98■■□□□ 1.27
LDB3-208ENST00000623007 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.98■■□□□ 1.27
LDB3-208ENST00000623007 STAC3Q96MF2 364 aa22.97■■□□□ 1.27
LDB3-208ENST00000623007 MYT1LQ9UL68 1186 aa22.97■■□□□ 1.27
LDB3-208ENST00000623007 BCORL1Q5H9F3 1711 aa22.96■■□□□ 1.27
LDB3-208ENST00000623007 RALGAPBQ86X10 1494 aa22.96■■□□□ 1.27
LDB3-208ENST00000623007 HSPA5P11021 654 aaKnown RBP22.94■■□□□ 1.26
LDB3-208ENST00000623007 A2MP01023 1474 aa22.94■■□□□ 1.26
LDB3-208ENST00000623007 NBPF8Q3BBV2 869 aa22.93■■□□□ 1.26
LDB3-208ENST00000623007 RNF17Q9BXT8 1623 aaKnown RBP22.93■■□□□ 1.26
LDB3-208ENST00000623007 NEURL4Q96JN8 1562 aa22.92■■□□□ 1.26
LDB3-208ENST00000623007 POLR1AO95602 1720 aaPredicted RBP22.92■■□□□ 1.26
LDB3-208ENST00000623007 TRPM2O94759 1503 aa22.92■■□□□ 1.26
LDB3-208ENST00000623007 DDX10Q13206 875 aaKnown RBP22.91■■□□□ 1.26
LDB3-208ENST00000623007 SPATA31E1Q6ZUB1 1445 aa22.91■■□□□ 1.26
LDB3-208ENST00000623007 PLA2R1Q13018 1463 aa22.91■■□□□ 1.26
LDB3-208ENST00000623007 LMTK2Q8IWU2 1503 aa22.91■■□□□ 1.26
LDB3-208ENST00000623007 E9PCH4 1651 aa22.9■■□□□ 1.26
LDB3-208ENST00000623007 PTPRTO14522 1441 aa22.9■■□□□ 1.26
LDB3-208ENST00000623007 ARID4BQ4LE39 1312 aaPredicted RBP22.9■■□□□ 1.26
LDB3-208ENST00000623007 SPHKAPQ2M3C7 1700 aa22.89■■□□□ 1.25
LDB3-208ENST00000623007 KIF3BO15066 747 aa22.88■■□□□ 1.25
LDB3-208ENST00000623007 DIP2BQ9P265 1576 aa22.86■■□□□ 1.25
LDB3-208ENST00000623007 ANP32CO43423 234 aa22.86■■□□□ 1.25
LDB3-208ENST00000623007 MROH1Q8NDA8 1641 aa22.85■■□□□ 1.25
LDB3-208ENST00000623007 CEP152O94986 1710 aa22.84■■□□□ 1.25
LDB3-208ENST00000623007 RICTORQ6R327 1708 aa22.84■■□□□ 1.25
LDB3-208ENST00000623007 DCAF11Q8TEB1 546 aa22.84■■□□□ 1.25
LDB3-208ENST00000623007 LAMC1P11047 1609 aa22.83■■□□□ 1.25
LDB3-208ENST00000623007 CCER2I3L3R5 266 aa22.83■■□□□ 1.24
LDB3-208ENST00000623007 EFCAB6Q5THR3 1501 aa22.83■■□□□ 1.24
LDB3-208ENST00000623007 USP47Q96K76 1375 aa22.82■■□□□ 1.24
LDB3-208ENST00000623007 PRAG1Q86YV5 1406 aa22.82■■□□□ 1.24
LDB3-208ENST00000623007 HIRIP3Q9BW71 556 aaPredicted RBP22.81■■□□□ 1.24
LDB3-208ENST00000623007 ABCA6Q8N139 1617 aa22.8■■□□□ 1.24
LDB3-208ENST00000623007 ZMYM4Q5VZL5 1548 aa22.8■■□□□ 1.24
LDB3-208ENST00000623007 CCDC7Q96M83 1385 aa22.79■■□□□ 1.24
LDB3-208ENST00000623007 WASHC2AQ641Q2 1341 aa22.79■■□□□ 1.24
LDB3-208ENST00000623007 TRPM1Q7Z4N2 1603 aa22.78■■□□□ 1.24
LDB3-208ENST00000623007 FRMPD1Q5SYB0 1578 aa22.77■■□□□ 1.24
LDB3-208ENST00000623007 GPRASP1Q5JY77 1395 aa22.77■■□□□ 1.24
LDB3-208ENST00000623007 ZNF326Q5BKZ1 582 aaKnown RBP22.77■■□□□ 1.24
LDB3-208ENST00000623007 CARD11Q9BXL7 1154 aa22.77■■□□□ 1.24
LDB3-208ENST00000623007 ROCK2O75116 1388 aaKnown RBP22.76■■□□□ 1.23
LDB3-208ENST00000623007 DIP2CQ9Y2E4 1556 aa22.76■■□□□ 1.23
LDB3-208ENST00000623007 CNTLNQ9NXG0 1405 aa22.76■■□□□ 1.23
LDB3-208ENST00000623007 ZC3H13Q5T200 1668 aaKnown RBP22.75■■□□□ 1.23
LDB3-208ENST00000623007 FAM69CQ0P6D2 419 aa22.75■■□□□ 1.23
LDB3-208ENST00000623007 KDM2AQ9Y2K7 1162 aa22.73■■□□□ 1.23
LDB3-208ENST00000623007 CLTCL1P53675 1640 aa22.72■■□□□ 1.23
LDB3-208ENST00000623007 PPRC1Q5VV67 1664 aaKnown RBP22.71■■□□□ 1.23
LDB3-208ENST00000623007 REREQ9P2R6 1566 aa22.71■■□□□ 1.23
LDB3-208ENST00000623007 KIF1BO60333 1816 aa22.7■■□□□ 1.22
LDB3-208ENST00000623007 RGL3Q3MIN7 710 aa22.69■■□□□ 1.22
LDB3-208ENST00000623007 TRHP20396 242 aaPredicted RBP22.68■■□□□ 1.22
LDB3-208ENST00000623007 KIF7Q2M1P5 1343 aa22.68■■□□□ 1.22
LDB3-208ENST00000623007 RAPGEF3O95398 923 aa22.68■■□□□ 1.22
LDB3-208ENST00000623007 ABCC3O15438 1527 aa22.67■■□□□ 1.22
LDB3-208ENST00000623007 ARHGAP31Q2M1Z3 1444 aa22.67■■□□□ 1.22
LDB3-208ENST00000623007 KIAA1210Q9ULL0 1709 aa22.66■■□□□ 1.22
LDB3-208ENST00000623007 PPP6R1Q9UPN7 881 aa22.66■■□□□ 1.22
LDB3-208ENST00000623007 MYOM2P54296 1465 aa22.65■■□□□ 1.22
LDB3-208ENST00000623007 YTHDC1Q96MU7 727 aaKnown RBP22.65■■□□□ 1.22
LDB3-208ENST00000623007 WASHC2CQ9Y4E1 1318 aa22.65■■□□□ 1.22
LDB3-208ENST00000623007 MADDQ8WXG6 1647 aa22.64■■□□□ 1.22
LDB3-208ENST00000623007 SLC24A1O60721 1099 aa22.64■■□□□ 1.21
LDB3-208ENST00000623007 CAMSAP1Q5T5Y3 1602 aa22.64■■□□□ 1.21
LDB3-208ENST00000623007 AGLP35573 1532 aa22.62■■□□□ 1.21
LDB3-208ENST00000623007 NPATQ14207 1427 aa22.61■■□□□ 1.21
LDB3-208ENST00000623007 GGT6Q6P531 493 aa22.61■■□□□ 1.21
LDB3-208ENST00000623007 C11orf95C9JLR9 678 aaPredicted RBP22.59■■□□□ 1.21
LDB3-208ENST00000623007 RPGRIP1LQ68CZ1 1315 aa22.58■■□□□ 1.21
LDB3-208ENST00000623007 KIF13AQ9H1H9 1805 aa22.58■■□□□ 1.21
LDB3-208ENST00000623007 ADGRB3O60242 1522 aa22.58■■□□□ 1.21
LDB3-208ENST00000623007 TSPOAP1O95153 1857 aa22.57■■□□□ 1.2
LDB3-208ENST00000623007 ST20-MTHFSA0A0A6YYL1 179 aa22.57■■□□□ 1.2
LDB3-208ENST00000623007 NOS1P29475 1434 aa22.56■■□□□ 1.2
LDB3-208ENST00000623007 YEATS2Q9ULM3 1422 aa22.56■■□□□ 1.2
LDB3-208ENST00000623007 IFT172Q9UG01 1749 aa22.56■■□□□ 1.2
LDB3-208ENST00000623007 EIF3AQ14152 1382 aaKnown RBP22.55■■□□□ 1.2
LDB3-208ENST00000623007 KTN1Q86UP2 1357 aaKnown RBP22.54■■□□□ 1.2
LDB3-208ENST00000623007 IQGAP1P46940 1657 aa22.52■■□□□ 1.2
LDB3-208ENST00000623007 PIK3C2BO00750 1634 aa22.52■■□□□ 1.2
LDB3-208ENST00000623007 SCAF11Q99590 1463 aaKnown RBP22.52■■□□□ 1.2
LDB3-208ENST00000623007 NRXN1Q9ULB1 1477 aa22.52■■□□□ 1.2
LDB3-208ENST00000623007 SLC52A1Q9NWF4 448 aa22.51■■□□□ 1.19
LDB3-208ENST00000623007 CDCA8Q53HL2 280 aa22.5■■□□□ 1.19
LDB3-208ENST00000623007 NBPF1Q3BBV0 1214 aa22.49■■□□□ 1.19
LDB3-208ENST00000623007 PRKRIP1Q9H875 184 aaPredicted RBP22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms