RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 ARID3CA6NKF2 412 aa10.31□□□□□ -0.76
VPS11-209ENST00000622309 KDM4FA0A1W2PPD8 638 aa10.3□□□□□ -0.76
VPS11-209ENST00000622309 TPM2P07951 284 aa10.3□□□□□ -0.76
VPS11-209ENST00000622309 KDM6BO15054 1643 aa10.3□□□□□ -0.76
VPS11-209ENST00000622309 SECISBP2LQ93073 1101 aaKnown RBP10.29□□□□□ -0.76
VPS11-209ENST00000622309 POGKQ9P215 609 aa10.29□□□□□ -0.76
VPS11-209ENST00000622309 SETD5Q9C0A6 1442 aa10.29□□□□□ -0.76
VPS11-209ENST00000622309 JPH4Q96JJ6 628 aa10.28□□□□□ -0.76
VPS11-209ENST00000622309 DIP2BQ9P265 1576 aa10.28□□□□□ -0.76
VPS11-209ENST00000622309 TMED8Q6PL24 325 aaPredicted RBP10.28□□□□□ -0.76
VPS11-209ENST00000622309 PRKRIP1Q9H875 184 aaPredicted RBP10.27□□□□□ -0.77
VPS11-209ENST00000622309 GOLGA6L3A6NEY3 463 aa10.26□□□□□ -0.77
VPS11-209ENST00000622309 WWC1Q8IX03 1113 aa10.26□□□□□ -0.77
VPS11-209ENST00000622309 EXOC6Q8TAG9 804 aa10.26□□□□□ -0.77
VPS11-209ENST00000622309 ZNF526Q8TF50 670 aaPredicted RBP10.25□□□□□ -0.77
VPS11-209ENST00000622309 NCLP19338 710 aaKnown RBP10.23□□□□□ -0.77
VPS11-209ENST00000622309 CCDC9Q9Y3X0 531 aaKnown RBP10.23□□□□□ -0.77
VPS11-209ENST00000622309 CANXP27824 592 aaKnown RBP10.23□□□□□ -0.77
VPS11-209ENST00000622309 ZNF326Q5BKZ1 582 aaKnown RBP10.23□□□□□ -0.77
VPS11-209ENST00000622309 BCCIPQ9P287 314 aaKnown RBP eCLIP10.23□□□□□ -0.77
VPS11-209ENST00000622309 PHLDB1Q86UU1 1377 aa10.23□□□□□ -0.77
VPS11-209ENST00000622309 XRCC6P12956 609 aaKnown RBP eCLIP10.23□□□□□ -0.77
VPS11-209ENST00000622309 ESPNB1AK53 854 aa10.22□□□□□ -0.77
VPS11-209ENST00000622309 PCF11O94913 1555 aaKnown RBP10.21□□□□□ -0.77
VPS11-209ENST00000622309 RRP1P56182 461 aaKnown RBP10.21□□□□□ -0.77
VPS11-209ENST00000622309 CNTLNQ9NXG0 1405 aa10.21□□□□□ -0.77
VPS11-209ENST00000622309 KCNG1Q9UIX4 513 aa10.21□□□□□ -0.77
VPS11-209ENST00000622309 ADCY10Q96PN6 1610 aa10.21□□□□□ -0.78
VPS11-209ENST00000622309 TIAM1Q13009 1591 aa10.21□□□□□ -0.78
VPS11-209ENST00000622309 TRIM44Q96DX7 344 aaPredicted RBP10.21□□□□□ -0.78
VPS11-209ENST00000622309 CNGB1Q14028 1251 aaPredicted RBP10.2□□□□□ -0.78
VPS11-209ENST00000622309 MAP7D2Q96T17 732 aa10.2□□□□□ -0.78
VPS11-209ENST00000622309 LRRC9Q6ZRR7 1453 aa10.2□□□□□ -0.78
VPS11-209ENST00000622309 HSPA5P11021 654 aaKnown RBP10.2□□□□□ -0.78
VPS11-209ENST00000622309 ZNF592Q92610 1267 aa10.2□□□□□ -0.78
VPS11-209ENST00000622309 PANK2Q9BZ23 570 aa10.19□□□□□ -0.78
VPS11-209ENST00000622309 MYH16Q9H6N6 1097 aa10.19□□□□□ -0.78
VPS11-209ENST00000622309 ZHX1Q9UKY1 873 aaPredicted RBP10.19□□□□□ -0.78
VPS11-209ENST00000622309 SENP3-EIF4A1A0A087X0R7 540 aa10.18□□□□□ -0.78
VPS11-209ENST00000622309 SMAP1Q8IYB5 467 aaPredicted RBP10.18□□□□□ -0.78
VPS11-209ENST00000622309 EIF4G2P78344 907 aaKnown RBP eCLIP10.18□□□□□ -0.78
VPS11-209ENST00000622309 KIAA1211Q6ZU35 1233 aa10.18□□□□□ -0.78
VPS11-209ENST00000622309 ZNF428Q96B54 188 aa10.17□□□□□ -0.78
VPS11-209ENST00000622309 MTUS2Q5JR59 1369 aa10.17□□□□□ -0.78
VPS11-209ENST00000622309 GTF2E1P29083 439 aaPredicted RBP10.17□□□□□ -0.78
VPS11-209ENST00000622309 ADGRL1O94910 1474 aa10.17□□□□□ -0.78
VPS11-209ENST00000622309 TSPOAP1O95153 1857 aa10.16□□□□□ -0.78
VPS11-209ENST00000622309 FAM161AQ3B820 660 aa10.16□□□□□ -0.78
VPS11-209ENST00000622309 ARID3AQ99856 593 aa10.16□□□□□ -0.78
VPS11-209ENST00000622309 CUL7Q14999 1698 aa10.16□□□□□ -0.78
VPS11-209ENST00000622309 TNNT2P45379 298 aaPredicted RBP10.16□□□□□ -0.78
VPS11-209ENST00000622309 SKAP1Q86WV1 359 aa10.16□□□□□ -0.78
VPS11-209ENST00000622309 GZF1Q9H116 711 aaPredicted RBP10.16□□□□□ -0.78
VPS11-209ENST00000622309 FAM13BQ9NYF5 915 aa10.16□□□□□ -0.78
VPS11-209ENST00000622309 KIAA0586Q9BVV6 1533 aa10.16□□□□□ -0.78
VPS11-209ENST00000622309 MRE11P49959 708 aa10.15□□□□□ -0.78
VPS11-209ENST00000622309 RCAN3Q9UKA8 241 aa10.15□□□□□ -0.78
VPS11-209ENST00000622309 GLI2P10070 1586 aa10.15□□□□□ -0.79
VPS11-209ENST00000622309 BECN1Q14457 450 aa10.15□□□□□ -0.79
VPS11-209ENST00000622309 STAC3Q96MF2 364 aa10.15□□□□□ -0.79
VPS11-209ENST00000622309 PLB1Q6P1J6 1458 aa10.15□□□□□ -0.79
VPS11-209ENST00000622309 IPO4Q8TEX9 1081 aaKnown RBP10.14□□□□□ -0.79
VPS11-209ENST00000622309 SLKQ9H2G2 1235 aaPredicted RBP10.14□□□□□ -0.79
VPS11-209ENST00000622309 FSD2A1L4K1 749 aa10.14□□□□□ -0.79
VPS11-209ENST00000622309 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.14□□□□□ -0.79
VPS11-209ENST00000622309 CTTNBP2Q8WZ74 1663 aa10.13□□□□□ -0.79
VPS11-209ENST00000622309 PATL2C9JE40 543 aaKnown RBP10.13□□□□□ -0.79
VPS11-209ENST00000622309 CHIC2Q9UKJ5 165 aa10.13□□□□□ -0.79
VPS11-209ENST00000622309 MAPK8IP2Q13387 824 aaPredicted RBP10.12□□□□□ -0.79
VPS11-209ENST00000622309 PTPRGP23470 1445 aa10.12□□□□□ -0.79
VPS11-209ENST00000622309 FMN1Q68DA7 1419 aa10.12□□□□□ -0.79
VPS11-209ENST00000622309 CASKIN1Q8WXD9 1431 aa10.12□□□□□ -0.79
VPS11-209ENST00000622309 HECW2Q9P2P5 1572 aa10.12□□□□□ -0.79
VPS11-209ENST00000622309 NCOA2Q15596 1464 aa10.12□□□□□ -0.79
VPS11-209ENST00000622309 ABCC2Q92887 1545 aa10.11□□□□□ -0.79
VPS11-209ENST00000622309 FYCO1Q9BQS8 1478 aa10.11□□□□□ -0.79
VPS11-209ENST00000622309 ERBB4Q15303 1308 aa10.11□□□□□ -0.79
VPS11-209ENST00000622309 FAM43BQ6ZT52 329 aaPredicted RBP10.11□□□□□ -0.79
VPS11-209ENST00000622309 VGLL3A8MV65 326 aa10.11□□□□□ -0.79
VPS11-209ENST00000622309 MTERF4Q7Z6M4 381 aaKnown RBP10.11□□□□□ -0.79
VPS11-209ENST00000622309 EFCAB5A4FU69 1503 aa10.1□□□□□ -0.79
VPS11-209ENST00000622309 TEX14Q8IWB6 1497 aa10.1□□□□□ -0.79
VPS11-209ENST00000622309 CARMIL2Q6F5E8 1435 aa10.1□□□□□ -0.79
VPS11-209ENST00000622309 CCDC7Q96M83 1385 aa10.1□□□□□ -0.79
VPS11-209ENST00000622309 ASXL2Q76L83 1435 aa10.1□□□□□ -0.79
VPS11-209ENST00000622309 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.09□□□□□ -0.79
VPS11-209ENST00000622309 ANP32BQ92688 251 aaKnown RBP10.09□□□□□ -0.79
VPS11-209ENST00000622309 GRPEL1Q9HAV7 217 aa10.09□□□□□ -0.79
VPS11-209ENST00000622309 C8orf34Q49A92 452 aa10.09□□□□□ -0.79
VPS11-209ENST00000622309 UTP14CQ5TAP6 766 aaKnown RBP10.09□□□□□ -0.79
VPS11-209ENST00000622309 TMC1Q8TDI8 760 aa10.09□□□□□ -0.79
VPS11-209ENST00000622309 KTN1Q86UP2 1357 aaKnown RBP10.09□□□□□ -0.79
VPS11-209ENST00000622309 UHRF1BP1LA0JNW5 1464 aa10.08□□□□□ -0.8
VPS11-209ENST00000622309 RRP7BPQ9NSQ0 103 aa10.08□□□□□ -0.8
VPS11-209ENST00000622309 FBXO41Q8TF61 875 aa10.08□□□□□ -0.8
VPS11-209ENST00000622309 PPRC1Q5VV67 1664 aaKnown RBP10.08□□□□□ -0.8
VPS11-209ENST00000622309 MAP3K1Q13233 1512 aa10.08□□□□□ -0.8
VPS11-209ENST00000622309 CFAP43Q8NDM7 1665 aa10.08□□□□□ -0.8
VPS11-209ENST00000622309 SOX12O15370 315 aa10.08□□□□□ -0.8
VPS11-209ENST00000622309 RIPK4P57078 832 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms