RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 MAGI2Q86UL8 1455 aa29.73■■■□□ 2.35
LIME1-210ENST00000621325 DCAF11Q8TEB1 546 aa29.72■■■□□ 2.35
LIME1-210ENST00000621325 CCDC144AA2RUR9 1427 aa29.71■■■□□ 2.35
LIME1-210ENST00000621325 RTEL1-TNFRSF6BF6WH68 1400 aa29.71■■■□□ 2.35
LIME1-210ENST00000621325 NPM1P06748 294 aaKnown RBP eCLIP29.7■■■□□ 2.35
LIME1-210ENST00000621325 USP47Q96K76 1375 aa29.7■■■□□ 2.34
LIME1-210ENST00000621325 KIF7Q2M1P5 1343 aa29.69■■■□□ 2.34
LIME1-210ENST00000621325 ADGRL1O94910 1474 aa29.68■■■□□ 2.34
LIME1-210ENST00000621325 SCAPERQ9BY12 1400 aa29.68■■■□□ 2.34
LIME1-210ENST00000621325 CNTLNQ9NXG0 1405 aa29.67■■■□□ 2.34
LIME1-210ENST00000621325 RALGAPBQ86X10 1494 aa29.66■■■□□ 2.34
LIME1-210ENST00000621325 RGL3Q3MIN7 710 aa29.64■■■□□ 2.34
LIME1-210ENST00000621325 ATP7AQ04656 1500 aa29.62■■■□□ 2.33
LIME1-210ENST00000621325 KDM5CP41229 1560 aa29.62■■■□□ 2.33
LIME1-210ENST00000621325 CARD11Q9BXL7 1154 aa29.61■■■□□ 2.33
LIME1-210ENST00000621325 INO80Q9ULG1 1556 aaPredicted RBP29.61■■■□□ 2.33
LIME1-210ENST00000621325 MYT1LQ9UL68 1186 aa29.61■■■□□ 2.33
LIME1-210ENST00000621325 BCORL1Q5H9F3 1711 aa29.59■■■□□ 2.33
LIME1-210ENST00000621325 POLR1AO95602 1720 aaPredicted RBP29.57■■■□□ 2.32
LIME1-210ENST00000621325 ATP10AO60312 1499 aa29.56■■■□□ 2.32
LIME1-210ENST00000621325 A2MP01023 1474 aa29.55■■■□□ 2.32
LIME1-210ENST00000621325 PRAG1Q86YV5 1406 aa29.53■■■□□ 2.32
LIME1-210ENST00000621325 CD109Q6YHK3 1445 aa29.52■■■□□ 2.32
LIME1-210ENST00000621325 KIF3BO15066 747 aa29.51■■■□□ 2.31
LIME1-210ENST00000621325 POLR3GLQ9BT43 218 aa29.51■■■□□ 2.31
LIME1-210ENST00000621325 ROCK2O75116 1388 aaKnown RBP29.51■■■□□ 2.31
LIME1-210ENST00000621325 E9PCH4 1651 aa29.5■■■□□ 2.31
LIME1-210ENST00000621325 DEPDC5O75140 1603 aa29.5■■■□□ 2.31
LIME1-210ENST00000621325 PRKCSHP14314 528 aaPredicted RBP29.5■■■□□ 2.31
LIME1-210ENST00000621325 DHX29Q7Z478 1369 aaKnown RBP29.48■■■□□ 2.31
LIME1-210ENST00000621325 ST20-MTHFSA0A0A6YYL1 179 aa29.48■■■□□ 2.31
LIME1-210ENST00000621325 PRKRIP1Q9H875 184 aaPredicted RBP29.47■■■□□ 2.31
LIME1-210ENST00000621325 NBPF1Q3BBV0 1214 aa29.46■■■□□ 2.31
LIME1-210ENST00000621325 KIDINS220Q9ULH0 1771 aa29.45■■■□□ 2.31
LIME1-210ENST00000621325 TRPM1Q7Z4N2 1603 aa29.45■■■□□ 2.31
LIME1-210ENST00000621325 CCDC184Q52MB2 194 aa29.45■■■□□ 2.3
LIME1-210ENST00000621325 ZNF518AQ6AHZ1 1483 aa29.44■■■□□ 2.3
LIME1-210ENST00000621325 VWDEQ8N2E2 1590 aa29.41■■■□□ 2.3
LIME1-210ENST00000621325 KANK1Q14678 1352 aa29.4■■■□□ 2.3
LIME1-210ENST00000621325 MROH1Q8NDA8 1641 aa29.39■■■□□ 2.3
LIME1-210ENST00000621325 TET3O43151 1660 aa29.39■■■□□ 2.3
LIME1-210ENST00000621325 ARID4BQ4LE39 1312 aaPredicted RBP29.38■■■□□ 2.29
LIME1-210ENST00000621325 PTPRTO14522 1441 aa29.38■■■□□ 2.29
LIME1-210ENST00000621325 POGZQ7Z3K3 1410 aa29.38■■■□□ 2.29
LIME1-210ENST00000621325 TRPM2O94759 1503 aa29.38■■■□□ 2.29
LIME1-210ENST00000621325 EIF2AK4Q9P2K8 1649 aaKnown RBP29.38■■■□□ 2.29
LIME1-210ENST00000621325 CYB5RLQ6IPT4 315 aa29.37■■■□□ 2.29
LIME1-210ENST00000621325 PRDM15P57071 1507 aaPredicted RBP29.36■■■□□ 2.29
LIME1-210ENST00000621325 SPHKAPQ2M3C7 1700 aa29.35■■■□□ 2.29
LIME1-210ENST00000621325 CFAP74Q9C0B2 1584 aa29.35■■■□□ 2.29
LIME1-210ENST00000621325 GPRASP1Q5JY77 1395 aa29.35■■■□□ 2.29
LIME1-210ENST00000621325 CLTCL1P53675 1640 aa29.33■■■□□ 2.29
LIME1-210ENST00000621325 CNGB1Q14028 1251 aaPredicted RBP29.33■■■□□ 2.29
LIME1-210ENST00000621325 RAPGEF3O95398 923 aa29.29■■■□□ 2.28
LIME1-210ENST00000621325 MLH3Q9UHC1 1453 aa29.29■■■□□ 2.28
LIME1-210ENST00000621325 HNRNPUQ00839 825 aaKnown RBP eCLIP29.28■■■□□ 2.28
LIME1-210ENST00000621325 MRS2Q9HD23 443 aa29.28■■■□□ 2.28
LIME1-210ENST00000621325 CEP152O94986 1710 aa29.27■■■□□ 2.28
LIME1-210ENST00000621325 FRMPD1Q5SYB0 1578 aa29.26■■■□□ 2.27
LIME1-210ENST00000621325 SUPT16HQ9Y5B9 1047 aaKnown RBP29.26■■■□□ 2.27
LIME1-210ENST00000621325 HECW2Q9P2P5 1572 aa29.25■■■□□ 2.27
LIME1-210ENST00000621325 NEO1Q92859 1461 aa29.24■■■□□ 2.27
LIME1-210ENST00000621325 UGGT1Q9NYU2 1555 aa29.24■■■□□ 2.27
LIME1-210ENST00000621325 LAMC1P11047 1609 aa29.24■■■□□ 2.27
LIME1-210ENST00000621325 EFCAB6Q5THR3 1501 aa29.23■■■□□ 2.27
LIME1-210ENST00000621325 FAM9BQ8IZU0 186 aa29.22■■■□□ 2.27
LIME1-210ENST00000621325 PPRC1Q5VV67 1664 aaKnown RBP29.22■■■□□ 2.27
LIME1-210ENST00000621325 MADDQ8WXG6 1647 aa29.21■■■□□ 2.27
LIME1-210ENST00000621325 TESK2Q96S53 571 aa29.21■■■□□ 2.27
LIME1-210ENST00000621325 ABCA6Q8N139 1617 aa29.2■■■□□ 2.27
LIME1-210ENST00000621325 RNF17Q9BXT8 1623 aaKnown RBP29.2■■■□□ 2.27
LIME1-210ENST00000621325 GGT6Q6P531 493 aa29.2■■■□□ 2.27
LIME1-210ENST00000621325 RIMBP3CA6NJZ7 1639 aa29.19■■■□□ 2.26
LIME1-210ENST00000621325 RIMBP3BA6NNM3 1639 aa29.19■■■□□ 2.26
LIME1-210ENST00000621325 RIMBP3Q9UFD9 1639 aa29.19■■■□□ 2.26
LIME1-210ENST00000621325 LMTK2Q8IWU2 1503 aa29.17■■■□□ 2.26
LIME1-210ENST00000621325 DISP3Q9P2K9 1392 aa29.16■■■□□ 2.26
LIME1-210ENST00000621325 MAP3K4Q9Y6R4 1608 aa29.15■■■□□ 2.26
LIME1-210ENST00000621325 COL17A1Q9UMD9 1497 aaPredicted RBP29.13■■■□□ 2.25
LIME1-210ENST00000621325 ANP32EQ9BTT0 268 aa29.12■■■□□ 2.25
LIME1-210ENST00000621325 NPATQ14207 1427 aa29.1■■■□□ 2.25
LIME1-210ENST00000621325 STAC3Q96MF2 364 aa29.1■■■□□ 2.25
LIME1-210ENST00000621325 DIP2CQ9Y2E4 1556 aa29.08■■■□□ 2.25
LIME1-210ENST00000621325 RICTORQ6R327 1708 aa29.08■■■□□ 2.25
LIME1-210ENST00000621325 WASHC2CQ9Y4E1 1318 aa29.07■■■□□ 2.24
LIME1-210ENST00000621325 NEURL4Q96JN8 1562 aa29.07■■■□□ 2.24
LIME1-210ENST00000621325 FAM69CQ0P6D2 419 aa29.06■■■□□ 2.24
LIME1-210ENST00000621325 GLI2P10070 1586 aa29.06■■■□□ 2.24
LIME1-210ENST00000621325 CFAP65Q6ZU64 1925 aaKnown RBP29.06■■■□□ 2.24
LIME1-210ENST00000621325 YEATS2Q9ULM3 1422 aa29.05■■■□□ 2.24
LIME1-210ENST00000621325 ADGRF5Q8IZF2 1346 aa29.05■■■□□ 2.24
LIME1-210ENST00000621325 KIF1BO60333 1816 aa29.04■■■□□ 2.24
LIME1-210ENST00000621325 TMF1P82094 1093 aa29.04■■■□□ 2.24
LIME1-210ENST00000621325 ABCC3O15438 1527 aa29.04■■■□□ 2.24
LIME1-210ENST00000621325 MROH2AA6NES4 1674 aa29.04■■■□□ 2.24
LIME1-210ENST00000621325 IQGAP1P46940 1657 aa29.04■■■□□ 2.24
LIME1-210ENST00000621325 FKBP8Q14318 412 aa29.03■■■□□ 2.24
LIME1-210ENST00000621325 CHGAP10645 457 aaKnown RBP29.01■■■□□ 2.23
LIME1-210ENST00000621325 CFAP70Q5T0N1 1121 aa29.01■■■□□ 2.23
LIME1-210ENST00000621325 SCAF11Q99590 1463 aaKnown RBP29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms